Detailed information NTG0023991

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STR_RS08740
• Genome accession: NC_006449
• Coordinates: 1657480..1657908 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus CNRZ1066
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1652480..1662908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STR_RS08700 (str1854)	-	1652613..1653061 (-)	449	Protein_1646	CAAX protease	-
STR_RS11470 (str1855)	-	1653135..1653560 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
STR_RS08710 (str1856)	-	1653803..1654000 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STR_RS08715 (str1857)	-	1654249..1655442 (-)	1194	WP_022096898.1	acetate kinase	-
STR_RS08720 (str1858)	comYH	1655498..1656454 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
STR_RS08725 (str1859)	comGG	1656499..1656816 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STR_RS08730 (str1860)	comYF	1656794..1657231 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
STR_RS08735 (str1861)	comGE	1657215..1657508 (-)	294	WP_011227584.1	competence type IV pilus minor pilin ComGE	-
STR_RS08740 (str1862)	comYD	1657480..1657908 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STR_RS08745 (str1863)	comYC	1657868..1658194 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STR_RS08750 (str1864)	comYB	1658191..1659291 (-)	1101	WP_148148889.1	competence type IV pilus assembly protein ComGB	Machinery gene
STR_RS08755 (str1865)	comGA/cglA/cilD	1659173..1660114 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
STR_RS08760 (str1866)	-	1660195..1660557 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=23991 STR_RS08740 WP_011226626.1 1657480..1657908(-) (comYD) [Streptococcus thermophilus CNRZ1066]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=23991 STR_RS08740 WP_011226626.1 1657480..1657908(-) (comYD) [Streptococcus thermophilus CNRZ1066]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38