Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M26_RS09410 Genome accession   NZ_CP028212
Coordinates   1758366..1759013 (-) Length   215 a.a.
NCBI ID   WP_032721230.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753366..1764013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS09385 (C7M26_01846) nsrR 1754963..1755403 (+) 441 WP_003245378.1 nitric oxide-sensing transcriptional repressor NsrR -
  C7M26_RS09390 (C7M26_01847) lytF 1755556..1757022 (+) 1467 WP_032721232.1 peptidoglycan endopeptidase LytF -
  C7M26_RS09395 (C7M26_01848) yhdC 1757064..1757387 (-) 324 WP_003233371.1 YqzG/YhdC family protein -
  C7M26_RS09400 (C7M26_01849) yhdB 1757588..1757830 (+) 243 WP_003233373.1 YhdB family protein -
  C7M26_RS09405 (C7M26_01850) yhdA 1757845..1758369 (-) 525 WP_032721231.1 FMN-dependent NADPH-azoreductase -
  C7M26_RS09410 (C7M26_01851) vraR 1758366..1759013 (-) 648 WP_032721230.1 two-component system response regulator YhcZ Regulator
  C7M26_RS09415 (C7M26_01852) yhcY 1759010..1760149 (-) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  C7M26_RS09420 (C7M26_01853) pgcA 1760298..1762043 (-) 1746 WP_032721227.1 phosphoglucomutase -
  C7M26_RS09425 (C7M26_01854) glpD 1762173..1763840 (-) 1668 WP_032721226.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24163.80 Da        Isoelectric Point: 6.3039

>NTDB_id=239909 C7M26_RS09410 WP_032721230.1 1758366..1759013(-) (vraR) [Bacillus subtilis strain SRCM102748]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHLLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=239909 C7M26_RS09410 WP_032721230.1 1758366..1759013(-) (vraR) [Bacillus subtilis strain SRCM102748]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAAATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATTTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTCCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.498

97.209

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.405

Multiple sequence alignment