Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CG450_RS14055 Genome accession   NZ_CP022477
Coordinates   2667222..2667509 (-) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain BL-010     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2662222..2672509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS14040 ade 2663141..2664862 (-) 1722 WP_094023957.1 adenine deaminase -
  CG450_RS14045 - 2664990..2665652 (-) 663 WP_003181388.1 potassium channel family protein -
  CG450_RS14050 - 2665717..2667054 (-) 1338 WP_011197947.1 ATP-binding protein -
  CG450_RS14055 abrB 2667222..2667509 (-) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CG450_RS14060 mreBH 2667816..2668823 (+) 1008 WP_003181381.1 rod-share determining protein MreBH -
  CG450_RS14065 - 2668897..2669028 (+) 132 WP_003181378.1 protein YkpC -
  CG450_RS14070 - 2669119..2670351 (+) 1233 WP_003181374.1 aminopeptidase -
  CG450_RS14075 - 2670489..2670863 (-) 375 WP_003181373.1 YybH family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=239898 CG450_RS14055 WP_003181383.1 2667222..2667509(-) (abrB) [Bacillus licheniformis strain BL-010]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=239898 CG450_RS14055 WP_003181383.1 2667222..2667509(-) (abrB) [Bacillus licheniformis strain BL-010]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment