Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CG450_RS08750 Genome accession   NZ_CP022477
Coordinates   1675663..1676433 (+) Length   256 a.a.
NCBI ID   WP_003183624.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL-010     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1670663..1681433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS08720 - 1671007..1673061 (+) 2055 WP_225315881.1 HD family phosphohydrolase -
  CG450_RS08725 ybeY 1673058..1673534 (+) 477 WP_003183635.1 rRNA maturation RNase YbeY -
  CG450_RS08730 - 1673512..1673892 (+) 381 WP_003183633.1 diacylglycerol kinase family protein -
  CG450_RS08735 - 1674024..1674434 (+) 411 WP_017474320.1 cytidine deaminase -
  CG450_RS08740 era 1674415..1675320 (+) 906 WP_009327871.1 GTPase Era -
  CG450_RS08745 - 1675482..1675625 (+) 144 WP_003183626.1 YqzL family protein -
  CG450_RS08750 recO 1675663..1676433 (+) 771 WP_003183624.1 DNA repair protein RecO Machinery gene
  CG450_RS08755 glyQ 1676766..1677653 (+) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  CG450_RS08760 glyS 1677646..1679685 (+) 2040 WP_009327872.1 glycine--tRNA ligase subunit beta -
  CG450_RS08765 - 1679883..1680521 (+) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  CG450_RS08770 - 1680547..1681359 (+) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29473.12 Da        Isoelectric Point: 8.5644

>NTDB_id=239883 CG450_RS08750 WP_003183624.1 1675663..1676433(+) (recO) [Bacillus licheniformis strain BL-010]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=239883 CG450_RS08750 WP_003183624.1 1675663..1676433(+) (recO) [Bacillus licheniformis strain BL-010]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

78.125

100

0.781

Multiple sequence alignment