Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C7M26_RS05395 Genome accession   NZ_CP028212
Coordinates   991956..992387 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM102748     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 986956..997387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS05385 (C7M26_01057) hexA 988440..991016 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  C7M26_RS05390 (C7M26_01058) cotE 991149..991694 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  C7M26_RS05395 (C7M26_01059) ymcA 991956..992387 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C7M26_RS05400 (C7M26_01060) miaB 992389..993918 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C7M26_RS05405 (C7M26_01061) kbl 994066..995244 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  C7M26_RS05410 (C7M26_01062) tdh 995257..996300 (-) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  C7M26_RS05415 (C7M26_01063) spoVS 996566..996826 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=239866 C7M26_RS05395 WP_003231834.1 991956..992387(-) (ymcA) [Bacillus subtilis strain SRCM102748]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=239866 C7M26_RS05395 WP_003231834.1 991956..992387(-) (ymcA) [Bacillus subtilis strain SRCM102748]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment