Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CGZ47_RS09005 Genome accession   NZ_CP022475
Coordinates   1718111..1718386 (-) Length   91 a.a.
NCBI ID   WP_232505303.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain KG6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1717216..1718145 1718111..1718386 flank -34


Gene organization within MGE regions


Location: 1717216..1718386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ47_RS09000 (CGZ47_09000) - 1717216..1718145 (+) 930 WP_065825252.1 IS30-like element ISLpl1 family transposase -
  CGZ47_RS09005 (CGZ47_09005) sigH 1718111..1718386 (-) 276 WP_232505303.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10609.03 Da        Isoelectric Point: 4.2683

>NTDB_id=239850 CGZ47_RS09005 WP_232505303.1 1718111..1718386(-) (sigH) [Latilactobacillus curvatus strain KG6]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGLVDCK
FNPNFRTNLSA

Nucleotide


Download         Length: 276 bp        

>NTDB_id=239850 CGZ47_RS09005 WP_232505303.1 1718111..1718386(-) (sigH) [Latilactobacillus curvatus strain KG6]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTGGTAGATTGCAAA
TTTAATCCGAATTTTCGGACAAATTTGTCAGCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

71.765

93.407

0.67

Multiple sequence alignment