Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CG419_RS10635 Genome accession   NZ_CP022474
Coordinates   239137..239844 (-) Length   235 a.a.
NCBI ID   WP_089556239.1    Uniprot ID   A0AAC9UMF6
Organism   Latilactobacillus curvatus strain MRS6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 234137..244844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG419_RS01125 (CG419_01125) rpoC 235420..239064 (+) 3645 WP_089556238.1 DNA-directed RNA polymerase subunit beta' -
  CG419_RS10635 (CG419_01130) comC 239137..239844 (-) 708 WP_089556239.1 A24 family peptidase Machinery gene
  CG419_RS01135 (CG419_01135) rpsL 240115..240528 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  CG419_RS01140 (CG419_01140) rpsG 240618..241088 (+) 471 WP_004270185.1 30S ribosomal protein S7 -
  CG419_RS01145 (CG419_01145) fusA 241180..243267 (+) 2088 WP_004270213.1 elongation factor G -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26614.98 Da        Isoelectric Point: 7.1119

>NTDB_id=239820 CG419_RS10635 WP_089556239.1 239137..239844(-) (comC) [Latilactobacillus curvatus strain MRS6]
MTRLLIYFLTFVIGACCASFLTVCAWRWPLGLSITWPGSRCDFCHHALAWYDLCPIISYLILRGHCRYCDTRIQHHFFTS
EVIGGLLACCLASQYFTPRIGYLLLILYLLSLVDIFHTALYPVPMVLAFMPLFIDYWPTNHWLSALLIGSTLSVINYFSD
GIGTGDIELLAILGLWFGLEVTLSMLLIACLLCLIKYLIDSLHHPVVLALVGRRPIPFIPYISYGVLIVLFIVNT

Nucleotide


Download         Length: 708 bp        

>NTDB_id=239820 CG419_RS10635 WP_089556239.1 239137..239844(-) (comC) [Latilactobacillus curvatus strain MRS6]
ATGACACGTTTGTTAATATATTTTTTAACCTTTGTTATTGGCGCGTGTTGCGCCTCTTTTTTAACCGTTTGCGCTTGGCG
TTGGCCACTTGGTTTATCCATCACATGGCCTGGTTCACGGTGTGACTTCTGCCATCACGCCCTCGCTTGGTACGACTTAT
GTCCAATTATCAGTTACCTCATTCTCAGAGGGCACTGCCGCTATTGTGATACTCGAATCCAGCACCATTTTTTTACTAGT
GAGGTTATTGGCGGCTTGTTAGCGTGTTGCTTAGCCAGTCAATATTTCACACCACGGATTGGCTATTTATTGCTTATCCT
TTACTTGTTGAGCCTAGTCGATATTTTCCATACAGCTCTATACCCAGTTCCTATGGTACTGGCTTTTATGCCTTTGTTTA
TTGACTACTGGCCGACAAACCATTGGCTCAGTGCCCTATTGATTGGCAGCACCTTATCTGTCATCAACTACTTTTCAGAT
GGCATCGGTACTGGTGACATTGAATTATTGGCAATTCTTGGGTTGTGGTTTGGATTGGAGGTCACCCTATCCATGTTATT
AATTGCCTGTCTCCTCTGTTTAATCAAATATCTCATTGATAGTCTCCACCATCCAGTTGTCCTCGCCTTAGTCGGACGCC
GCCCAATTCCATTTATCCCGTATATCAGCTACGGTGTCTTAATCGTTTTGTTTATTGTAAACACATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

51.101

96.596

0.494

Multiple sequence alignment