Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CG419_RS08860 Genome accession   NZ_CP022474
Coordinates   1772875..1774683 (+) Length   602 a.a.
NCBI ID   WP_089557058.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain MRS6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767875..1779683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG419_RS08850 (CG419_08850) - 1770053..1771291 (-) 1239 WP_089557056.1 nucleoside transporter C-terminal domain-containing protein -
  CG419_RS08855 (CG419_08855) - 1771470..1772612 (-) 1143 WP_341482964.1 LCP family protein -
  CG419_RS08860 (CG419_08860) pepF 1772875..1774683 (+) 1809 WP_089557058.1 oligoendopeptidase F Regulator
  CG419_RS08865 (CG419_08865) - 1774724..1775500 (-) 777 WP_065825914.1 metal ABC transporter permease -
  CG419_RS08870 (CG419_08870) - 1775535..1776215 (-) 681 WP_089557059.1 ATP-binding cassette domain-containing protein -
  CG419_RS08875 (CG419_08875) - 1776212..1777099 (-) 888 WP_076801705.1 zinc ABC transporter substrate-binding protein -
  CG419_RS08880 (CG419_08880) - 1777373..1777954 (-) 582 WP_089557060.1 hypothetical protein -
  CG419_RS08885 (CG419_08885) - 1778060..1779601 (-) 1542 WP_089557061.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67363.43 Da        Isoelectric Point: 4.6288

>NTDB_id=239817 CG419_RS08860 WP_089557058.1 1772875..1774683(+) (pepF) [Latilactobacillus curvatus strain MRS6]
MSTQQLPTRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIEQILTTFRQLETIYVYASM
KNDQDTANATYQGYQAQVDALAAEVSAAAAFLEPAILAIPAGQLADWLTKMPNLAVYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTLQLSDGVYSQLLQSTNRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVTHIFDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQSGALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLAKLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=239817 CG419_RS08860 WP_089557058.1 1772875..1774683(+) (pepF) [Latilactobacillus curvatus strain MRS6]
ATGTCAACTCAACAACTCCCCACCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCGAACAAATCTTAACCACTTTCCGCCAACTCGAAACAATTTACGTTTATGCTAGCATG
AAAAATGATCAAGATACCGCCAATGCAACTTATCAAGGCTATCAAGCTCAAGTTGACGCACTGGCTGCCGAAGTTTCAGC
AGCAGCGGCCTTTTTAGAGCCTGCGATTCTTGCTATTCCAGCTGGGCAATTAGCAGATTGGCTTACCAAGATGCCTAATT
TAGCAGTTTACAGCCATTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCCGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGTGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTGCAGCTTTCAGACGGGGTCTACAGCCAACTTTTGCAATCAACCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCACAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCGCCCAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTGAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTCTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAGGCGTTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTACCCATATTTTTGATGA
CCGCTTAATCGATGTTTGTGAAAATCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAACCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAATCTGATCCTAAGGTCCAGGCCTATCTATTGAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTCGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCGCTAACGGTATTAGCACCAAACAGTCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGCCTAGATCAACTCGAAGCCCTACTTGCTAAACTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.143

98.505

0.543

Multiple sequence alignment