Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M23_RS17685 Genome accession   NZ_CP028209
Coordinates   3462675..3463811 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3457675..3468811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS17645 (C7M23_03474) xre 3458008..3458349 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  C7M23_RS17650 (C7M23_03475) xkdA 3458512..3459108 (+) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  C7M23_RS17655 (C7M23_03476) xpdC 3459152..3459988 (-) 837 WP_131227335.1 manganese catalase family protein -
  C7M23_RS17660 (C7M23_03477) pghB 3460065..3460667 (-) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  C7M23_RS17665 (C7M23_03478) yjqA 3460772..3461149 (+) 378 WP_014479546.1 PH domain-containing protein -
  C7M23_RS17670 (C7M23_03479) xlyB 3461189..3462142 (-) 954 WP_015252290.1 N-acetylmuramoyl-L-alanine amidase -
  C7M23_RS17675 (C7M23_03480) yjpA 3462263..3462520 (+) 258 WP_131227334.1 YciI family protein -
  C7M23_RS17680 (C7M23_03481) phrA 3462551..3462685 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  C7M23_RS17685 (C7M23_03482) rapC 3462675..3463811 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  C7M23_RS17690 (C7M23_03483) yjoB 3463957..3465228 (-) 1272 WP_131227333.1 ATPase YjoB -
  C7M23_RS17695 (C7M23_03484) bstD 3465377..3465841 (+) 465 WP_014479541.1 DinB family protein -
  C7M23_RS17700 (C7M23_03485) yjnA 3466066..3466830 (+) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  C7M23_RS17705 (C7M23_03486) uxaA 3466871..3468364 (-) 1494 WP_131227332.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=239804 C7M23_RS17685 WP_015252291.1 3462675..3463811(-) (rapC) [Bacillus subtilis strain SRCM102745]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=239804 C7M23_RS17685 WP_015252291.1 3462675..3463811(-) (rapC) [Bacillus subtilis strain SRCM102745]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418