Detailed information NTG0239780

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BGM07_RS24100
• Genome accession: NZ_CP022473
• Coordinates: 3073691..3074737 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MAVP-Q
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3068691..3079737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BGM07_RS24080 (BGM07_024125)	rplC	3069264..3069893 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
BGM07_RS24085 (BGM07_024130)	rpsJ	3069908..3070219 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
BGM07_RS24090 (BGM07_024135)	rpmE	3070677..3070898 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
BGM07_RS24095 (BGM07_024140)	priA	3071193..3073397 (+)	2205	WP_021449555.1	primosomal protein N'	-
BGM07_RS24100 (BGM07_024145)	cytR	3073691..3074737 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
BGM07_RS24105 (BGM07_024150)	ftsN	3074913..3075458 (+)	546	WP_024703418.1	cell division protein FtsN	-
BGM07_RS24110 (BGM07_024155)	hslV	3075622..3076173 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
BGM07_RS24115 (BGM07_024160)	hslU	3076197..3077528 (+)	1332	WP_021449544.1	HslU--HslV peptidase ATPase subunit	-
BGM07_RS24120 (BGM07_024165)	-	3077713..3078630 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BGM07_RS24125 (BGM07_024170)	rraA	3078707..3079219 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
BGM07_RS24130 (BGM07_024175)	zapB	3079324..3079566 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=239780 BGM07_RS24100 WP_254894148.1 3073691..3074737(+) (cytR) [Vibrio parahaemolyticus strain MAVP-Q]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=239780 BGM07_RS24100 WP_254894148.1 3073691..3074737(+) (cytR) [Vibrio parahaemolyticus strain MAVP-Q]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871