Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M23_RS14095 Genome accession   NZ_CP028209
Coordinates   2658794..2659924 (-) Length   376 a.a.
NCBI ID   WP_131227504.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2653794..2664924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS14060 (C7M23_02757) yobQ 2654171..2654896 (+) 726 WP_080316886.1 helix-turn-helix domain-containing protein -
  C7M23_RS14065 (C7M23_02758) csaA 2654961..2655293 (+) 333 WP_017697558.1 chaperone CsaA -
  C7M23_RS14070 (C7M23_02759) aoxN 2655541..2656977 (-) 1437 WP_131227505.1 flavin monoamine oxidase family protein -
  C7M23_RS14075 (C7M23_02760) yobM 2657106..2657663 (+) 558 WP_029318053.1 SMI1/KNR4 family protein -
  C7M23_RS14080 - 2657762..2657917 (+) 156 Protein_2741 T7SS effector LXG polymorphic toxin -
  C7M23_RS21205 - 2657912..2658084 (+) 173 Protein_2742 hypothetical protein -
  C7M23_RS21210 (C7M23_02762) - 2658307..2658507 (+) 201 WP_021481449.1 hypothetical protein -
  C7M23_RS14090 (C7M23_02763) - 2658661..2658804 (-) 144 WP_153801665.1 hypothetical protein -
  C7M23_RS14095 (C7M23_02764) rapC 2658794..2659924 (-) 1131 WP_131227504.1 tetratricopeptide repeat protein Regulator
  C7M23_RS14100 - 2660058..2660204 (-) 147 Protein_2746 phage holin -
  C7M23_RS14105 (C7M23_02765) - 2661010..2661339 (-) 330 WP_250622472.1 YoqO family protein -
  C7M23_RS14110 - 2661659..2661934 (-) 276 Protein_2748 SOS response-associated peptidase family protein -
  C7M23_RS14115 (C7M23_02767) - 2662115..2662480 (-) 366 WP_131227501.1 hypothetical protein -
  C7M23_RS14120 (C7M23_02768) - 2662509..2663426 (-) 918 WP_051922667.1 SAR2788 family putative toxin -
  C7M23_RS14125 (C7M23_02769) - 2663446..2664351 (-) 906 WP_032725934.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.10 Da        Isoelectric Point: 5.5275

>NTDB_id=239778 C7M23_RS14095 WP_131227504.1 2658794..2659924(-) (rapC) [Bacillus subtilis strain SRCM102745]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDQKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=239778 C7M23_RS14095 WP_131227504.1 2658794..2659924(-) (rapC) [Bacillus subtilis strain SRCM102745]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATCAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457