Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C7M23_RS12925 Genome accession   NZ_CP028209
Coordinates   2460524..2462014 (+) Length   496 a.a.
NCBI ID   WP_131227578.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2455524..2467014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS12905 (C7M23_02532) serA 2456273..2457850 (-) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -
  C7M23_RS12910 (C7M23_02533) fmnP 2458347..2458919 (+) 573 WP_131227580.1 riboflavin transporter FmnP -
  C7M23_RS12915 (C7M23_02534) fdxA 2458959..2459207 (-) 249 WP_003225461.1 ferredoxin -
  C7M23_RS12920 (C7M23_02535) gmmB 2459473..2460531 (+) 1059 WP_131228340.1 helix-turn-helix domain-containing protein -
  C7M23_RS12925 (C7M23_02536) recS 2460524..2462014 (+) 1491 WP_131227578.1 ATP-dependent DNA helicase RecQ Machinery gene
  C7M23_RS12930 (C7M23_02537) ypbD 2462041..2462643 (+) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  C7M23_RS12935 (C7M23_02538) claE 2462594..2463322 (+) 729 WP_131227576.1 LysM peptidoglycan-binding domain-containing protein -
  C7M23_RS12940 (C7M23_02539) ypbF 2463385..2463828 (+) 444 WP_014480147.1 YpbF family protein -
  C7M23_RS12945 (C7M23_02540) ypbG 2463915..2464694 (+) 780 WP_131227574.1 metallophosphoesterase -
  C7M23_RS12950 (C7M23_02541) mecB 2464853..2465437 (+) 585 WP_003230533.1 genetic competence negative regulator -
  C7M23_RS12955 (C7M23_02542) gudB 2465593..2466867 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56537.10 Da        Isoelectric Point: 6.4518

>NTDB_id=239773 C7M23_RS12925 WP_131227578.1 2460524..2462014(+) (recS) [Bacillus subtilis strain SRCM102745]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMVPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=239773 C7M23_RS12925 WP_131227578.1 2460524..2462014(+) (recS) [Bacillus subtilis strain SRCM102745]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAGATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTTCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGTGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996