Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BGM07_RS18795 Genome accession   NZ_CP022473
Coordinates   1941254..1942675 (+) Length   473 a.a.
NCBI ID   WP_083962868.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-Q     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1936254..1947675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM07_RS18775 (BGM07_018820) - 1936313..1937065 (-) 753 WP_031776489.1 adenosylcobinamide-GDP ribazoletransferase -
  BGM07_RS18780 (BGM07_018825) cobT 1937110..1938153 (-) 1044 WP_021449191.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  BGM07_RS18785 (BGM07_018830) - 1938837..1939532 (+) 696 WP_020903895.1 NAD(P)H-binding protein -
  BGM07_RS18790 (BGM07_018835) - 1939725..1941098 (+) 1374 WP_021449192.1 L-cystine transporter -
  BGM07_RS18795 (BGM07_018840) sbcB 1941254..1942675 (+) 1422 WP_083962868.1 exodeoxyribonuclease I Machinery gene
  BGM07_RS18800 (BGM07_018845) - 1942731..1943105 (+) 375 WP_031776490.1 CidA/LrgA family protein -
  BGM07_RS18805 (BGM07_018850) - 1943107..1943784 (+) 678 WP_005454891.1 LrgB family protein -
  BGM07_RS18810 (BGM07_018855) cdd 1944149..1945036 (+) 888 WP_021449195.1 cytidine deaminase -
  BGM07_RS18815 (BGM07_018860) purT 1945184..1946359 (+) 1176 WP_021449196.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BGM07_RS18820 (BGM07_018865) - 1946461..1947111 (-) 651 WP_020840479.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54626.93 Da        Isoelectric Point: 4.9795

>NTDB_id=239770 BGM07_RS18795 WP_083962868.1 1941254..1942675(+) (sbcB) [Vibrio parahaemolyticus strain MAVP-Q]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYHARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=239770 BGM07_RS18795 WP_083962868.1 1941254..1942675(+) (sbcB) [Vibrio parahaemolyticus strain MAVP-Q]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAGCCAAAAACCACCAGCCTAGGCTATAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGACCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCATGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment