Detailed information NTG0239759

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BGM07_RS11680
• Genome accession: NZ_CP022473
• Coordinates: 579457..580446 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain MAVP-Q
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 574457..585446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BGM07_RS11645 (BGM07_011675)	ftsB	574465..574746 (+)	282	WP_005455577.1	cell division protein FtsB	-
BGM07_RS11650 (BGM07_011680)	ispD	574748..575452 (+)	705	WP_017449147.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BGM07_RS11655 (BGM07_011685)	ispF	575470..575946 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BGM07_RS11660 (BGM07_011690)	truD	575993..577036 (+)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
BGM07_RS11665 (BGM07_011695)	surE	577036..577812 (+)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
BGM07_RS11670 (BGM07_011700)	-	577812..578438 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BGM07_RS11675 (BGM07_011705)	-	578453..579376 (+)	924	WP_021450027.1	peptidoglycan DD-metalloendopeptidase family protein	-
BGM07_RS11680 (BGM07_011710)	rpoS	579457..580446 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
BGM07_RS11685 (BGM07_011715)	mutS	580526..583087 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
BGM07_RS11690 (BGM07_011720)	pncC	583172..583654 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
BGM07_RS11695 (BGM07_011725)	recA	583854..584897 (+)	1044	WP_021450024.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=239759 BGM07_RS11680 WP_005478537.1 579457..580446(+) (rpoS) [Vibrio parahaemolyticus strain MAVP-Q]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=239759 BGM07_RS11680 WP_005478537.1 579457..580446(+) (rpoS) [Vibrio parahaemolyticus strain MAVP-Q]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851