Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   BGM07_RS10460 Genome accession   NZ_CP022473
Coordinates   341909..342925 (+) Length   338 a.a.
NCBI ID   WP_021449761.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-Q     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336909..347925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM07_RS10445 (BGM07_010455) - 337333..338061 (-) 729 WP_015297397.1 redoxin family protein -
  BGM07_RS10450 (BGM07_010460) oxyR 338232..339140 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  BGM07_RS10455 (BGM07_010465) - 339196..341766 (-) 2571 WP_025622219.1 penicillin-binding protein 1A -
  BGM07_RS10460 (BGM07_010470) pilM 341909..342925 (+) 1017 WP_021449761.1 type IV pilus biogenesis protein PilM Machinery gene
  BGM07_RS10465 (BGM07_010475) pilN 342909..343487 (+) 579 WP_021449760.1 PilN domain-containing protein Machinery gene
  BGM07_RS10470 (BGM07_010480) pilO 343480..344073 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  BGM07_RS10475 (BGM07_010485) pilP 344063..344578 (+) 516 WP_021449759.1 pilus assembly protein PilP Machinery gene
  BGM07_RS10480 (BGM07_010490) pilQ 344610..346358 (+) 1749 WP_025442303.1 type IV pilus secretin PilQ Machinery gene
  BGM07_RS10485 (BGM07_010495) aroK 346547..347065 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37748.26 Da        Isoelectric Point: 6.8322

>NTDB_id=239749 BGM07_RS10460 WP_021449761.1 341909..342925(+) (pilM) [Vibrio parahaemolyticus strain MAVP-Q]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKELPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPDKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTSQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=239749 BGM07_RS10460 WP_021449761.1 341909..342925(+) (pilM) [Vibrio parahaemolyticus strain MAVP-Q]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTATTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGAGCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTCGTACGCCTTCGTGCGGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGTCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGATAAAAACAAATACTG
TTTGTTAGACATCGGCTCGTTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGTCACAAGAAGACTTACTTTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACGTCGATCAACGGTTCGCAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGTTGGCAGAAGAGCTGTCGCATCAGTTGGCATTGGAGTGTGAGTTGTTAA
ACCCACTCGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGCCGAGCGGCCGATTGGCAACATTTTTCGACGGCTGCA
GGGCTGGCGGTGCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

84.911

100

0.849
  pilM Vibrio cholerae strain A1552

49.263

100

0.494

Multiple sequence alignment