Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | BGM07_RS10465 | Genome accession | NZ_CP022473 |
| Coordinates | 342909..343487 (+) | Length | 192 a.a. |
| NCBI ID | WP_021449760.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain MAVP-Q | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 337909..348487
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BGM07_RS10450 (BGM07_010460) | oxyR | 338232..339140 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| BGM07_RS10455 (BGM07_010465) | - | 339196..341766 (-) | 2571 | WP_025622219.1 | penicillin-binding protein 1A | - |
| BGM07_RS10460 (BGM07_010470) | pilM | 341909..342925 (+) | 1017 | WP_021449761.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| BGM07_RS10465 (BGM07_010475) | pilN | 342909..343487 (+) | 579 | WP_021449760.1 | PilN domain-containing protein | Machinery gene |
| BGM07_RS10470 (BGM07_010480) | pilO | 343480..344073 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BGM07_RS10475 (BGM07_010485) | pilP | 344063..344578 (+) | 516 | WP_021449759.1 | pilus assembly protein PilP | Machinery gene |
| BGM07_RS10480 (BGM07_010490) | pilQ | 344610..346358 (+) | 1749 | WP_025442303.1 | type IV pilus secretin PilQ | Machinery gene |
| BGM07_RS10485 (BGM07_010495) | aroK | 346547..347065 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| BGM07_RS10490 (BGM07_010500) | aroB | 347097..348197 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22468.94 Da Isoelectric Point: 6.6554
>NTDB_id=239750 BGM07_RS10465 WP_021449760.1 342909..343487(+) (pilN) [Vibrio parahaemolyticus strain MAVP-Q]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVSKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVSKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=239750 BGM07_RS10465 WP_021449760.1 342909..343487(+) (pilN) [Vibrio parahaemolyticus strain MAVP-Q]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTAGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAACAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTAGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAACAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.812 |
100 |
0.828 |
| pilN | Vibrio cholerae strain A1552 |
62.431 |
94.271 |
0.589 |