Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CG015_RS13485 Genome accession   NZ_CP022469
Coordinates   13313..14494 (+) Length   393 a.a.
NCBI ID   WP_129532848.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8313..19494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS13470 (CG015_13485) - 9115..10101 (-) 987 WP_129532847.1 CobW family GTP-binding protein -
  CG015_RS13475 (CG015_13490) clcA 10594..11990 (+) 1397 Protein_9 H(+)/Cl(-) exchange transporter ClcA -
  CG015_RS13480 (CG015_13495) - 12139..13113 (+) 975 WP_013868491.1 TDT family transporter -
  CG015_RS13485 (CG015_13500) cqsA 13313..14494 (+) 1182 WP_129532848.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CG015_RS13490 (CG015_13505) - 14581..16631 (-) 2051 Protein_12 response regulator -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43569.39 Da        Isoelectric Point: 6.5585

>NTDB_id=239738 CG015_RS13485 WP_129532848.1 13313..14494(+) (cqsA) [Vibrio anguillarum strain MHK3]
MNSRKWKHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCE
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRTQLHRNAYTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEENQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=239738 CG015_RS13485 WP_129532848.1 13313..14494(+) (cqsA) [Vibrio anguillarum strain MHK3]
ATGAATTCACGTAAGTGGAAACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCTAACGGAAAACACCTAGTCCTGGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGTTGAAAAACGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACAGCCTTGTTGCAAGCTGTGTGCGGGCCACAAAGTAACGTCTACATTGACT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGTTATGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAG
CATTTACAAAAACTGATCGCTCGACACGGCCCAGGGCTCATCGTGGTTGATTCGATTTACAGCACTATCGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACTGCAGAGGTTGACTTTATTACAGCTAGCCTTGCGAAA
ACATTCGCGTATCGCGCTGGCGCTATTTGGGCGAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCAACATTGGACATTATCAAATCAGCCGATTCTAAAA
GAACTCAGTTGCACCGCAATGCATACACACTGCGTCGTGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATAGCGCTAGAAACCGGAGATGAACGAAATACAGAAAAAGTTCGCGATTATTTAGAAGAGAATCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGACTCACAAA
TTGACACCATATTAACCGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.475

98.473

0.674

Multiple sequence alignment