Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M23_RS07715 Genome accession   NZ_CP028209
Coordinates   1499388..1500023 (+) Length   211 a.a.
NCBI ID   WP_029318425.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494388..1505023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS07690 (C7M23_01514) liaI 1495515..1495895 (+) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -
  C7M23_RS07695 (C7M23_01515) liaH 1495922..1496599 (+) 678 WP_003228506.1 stress responsive protein LiaH -
  C7M23_RS07700 (C7M23_01516) liaG 1496700..1497572 (+) 873 WP_131228085.1 DUF4097 domain-containing protein -
  C7M23_RS07705 (C7M23_01517) liaF 1497606..1498331 (+) 726 WP_131228083.1 LiaRS two-component regulatory system accessory protein LiaF -
  C7M23_RS07710 (C7M23_01518) liaS 1498328..1499410 (+) 1083 WP_131228081.1 two-component system sensor histidine kinase LiaS -
  C7M23_RS07715 (C7M23_01519) vraR 1499388..1500023 (+) 636 WP_029318425.1 two-component system response regulator LiaR Regulator
  C7M23_RS07720 (C7M23_01520) gerAC 1500031..1501152 (-) 1122 WP_131228079.1 spore germination receptor protein GerAC -
  C7M23_RS07725 (C7M23_01521) gerAB 1501149..1502246 (-) 1098 WP_014480828.1 spore germination receptor protein GerAB -
  C7M23_RS07730 (C7M23_01522) gerAA 1502215..1503663 (-) 1449 WP_033884692.1 spore germination receptor protein GerAA -
  C7M23_RS07735 (C7M23_01523) yvzF 1503781..1503966 (+) 186 WP_003244599.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23123.77 Da        Isoelectric Point: 5.0163

>NTDB_id=239730 C7M23_RS07715 WP_029318425.1 1499388..1500023(+) (vraR) [Bacillus subtilis strain SRCM102745]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=239730 C7M23_RS07715 WP_029318425.1 1499388..1500023(+) (vraR) [Bacillus subtilis strain SRCM102745]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTAGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACAAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTAGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACAGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403

Multiple sequence alignment