Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   CG015_RS10220 Genome accession   NZ_CP022468
Coordinates   2239987..2243349 (-) Length   1120 a.a.
NCBI ID   WP_129532657.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2234987..2248349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS10200 (CG015_10205) - 2235948..2236376 (+) 429 WP_129532655.1 HIT family protein -
  CG015_RS10205 (CG015_10210) - 2236489..2236719 (-) 231 WP_010318896.1 FeoC-like transcriptional regulator -
  CG015_RS10210 (CG015_10215) feoB 2236716..2238989 (-) 2274 WP_129532656.1 Fe(2+) transporter permease subunit FeoB -
  CG015_RS10215 (CG015_10220) - 2238989..2239216 (-) 228 WP_013856356.1 FeoA family protein -
  CG015_RS10220 (CG015_10225) tfoS 2239987..2243349 (-) 3363 WP_129532657.1 AraC family transcriptional regulator Regulator
  CG015_RS10225 (CG015_10230) znuA 2243522..2244400 (-) 879 WP_017042522.1 zinc ABC transporter substrate-binding protein ZnuA -
  CG015_RS10230 (CG015_10235) znuC 2244485..2245267 (+) 783 WP_013856354.1 zinc ABC transporter ATP-binding protein ZnuC -
  CG015_RS10235 (CG015_10240) znuB 2245260..2246039 (+) 780 WP_026027242.1 zinc ABC transporter permease subunit ZnuB -
  CG015_RS10240 (CG015_10245) sucD 2246117..2246989 (-) 873 WP_129532658.1 succinate--CoA ligase subunit alpha -
  CG015_RS10245 (CG015_10250) sucC 2246989..2248155 (-) 1167 WP_013856351.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1120 a.a.        Molecular weight: 127982.94 Da        Isoelectric Point: 7.0505

>NTDB_id=239730 CG015_RS10220 WP_129532657.1 2239987..2243349(-) (tfoS) [Vibrio anguillarum strain MHK3]
MKGKNDYFKALFWILGFLTLLLAQGTQALDKAPSIFYPLPAQAQGKIFAAQNLFLGEEGGIWIHDVHGKVVFFDGQNILP
RRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYTYHAQTHKLVTY
SFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGMLNGGLIIDVED
PKRQQKLVGYSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGGIWIATDKGIRY
FSLFGQKFKRHSIAPLNNNPITKIVTRSDNKGYLFLTRQGLYQVDAENWQEPKLIFPGEVHDVAQIDDHSLWIATHTGIV
IYHLQTKKMIETSMLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYRLADNSLTDFGSVWFVDAFLPAKIIKLKSTRRGV
FIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISPKCLTETGNGIW
LTSSQGISLYNPMGEVVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPPNTNIIFSQVNV
DHIPVMFGRGRFQTLELEYGSSISFLFGALPESRALSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLLVRNYSPNPQNS
MINSLSFIVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLTNNQQLRKQLQI
RHIVVEQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCVDGWREEFAKAN
ISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVIIDCGDQVQSINSDKRISGFELEE
MQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKFIDVTEKEWLKKVEKLVHNYYSDPEFSTSSA
AKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFGLSPTQFVDDNE

Nucleotide


Download         Length: 3363 bp        

>NTDB_id=239730 CG015_RS10220 WP_129532657.1 2239987..2243349(-) (tfoS) [Vibrio anguillarum strain MHK3]
TTGAAAGGAAAGAATGACTATTTTAAAGCTTTGTTCTGGATCTTGGGTTTCCTGACGCTTTTATTAGCGCAGGGGACACA
AGCTCTAGACAAAGCACCTTCCATCTTCTATCCATTGCCAGCTCAGGCTCAAGGGAAAATTTTTGCCGCACAAAATTTGT
TTTTAGGTGAAGAAGGGGGAATTTGGATACACGATGTGCATGGCAAAGTGGTTTTCTTTGATGGACAAAACATCCTTCCC
CGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCTTAATAACGCTTTTTGGACGTTCATTGATAATGA
ACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTCAGCTTAACGCCTGGAATCATCATAAAAAAAATAGGTT
CGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACATACCATGCGCAAACCCACAAGTTAGTTACTTAT
TCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGTTAATGATGCGAAGTTTGTGCTTTCTAAATGGGT
ATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTTCTCACGTGCTCAGCTCTGGTAAAAACTTCATTG
AGAAACTCTATTTTTCCGAGAAACGTAGAGAGCTTGTGATTGGAATGCTCAATGGTGGGCTGATTATTGATGTCGAGGAC
CCAAAGCGCCAACAAAAGTTGGTTGGATATTCCCATGTATTATCTGTTGCTGAGACAGATCAAGAATATTGGATTGGTAC
TGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCAAGTTAGAAAGTAATGACCAAGACAATAATGGGT
TGCCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAAGGTGGGATTTGGATCGCGACGGATAAAGGTATTCGTTAC
TTTTCTCTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACCGCTCAACAATAATCCCATAACAAAAATTGTGACAAG
GTCAGATAATAAAGGATATTTGTTTTTAACTCGACAAGGGTTATACCAAGTCGATGCTGAAAATTGGCAAGAGCCTAAAC
TTATTTTCCCAGGAGAAGTGCATGATGTCGCTCAAATAGATGATCATTCTCTATGGATAGCTACACATACAGGCATTGTT
ATTTATCACTTGCAGACAAAAAAGATGATAGAAACGAGCATGTTACCTCTTAAGCTGCGTTCGAATGATACTAAACACCT
TGAATTTGATCATGAAGGACTATTATGGGGAGCAACAGGTAACCATTTGTGGTCATATCGGTTGGCCGATAACTCGCTCA
CCGATTTCGGTTCGGTATGGTTTGTTGATGCATTTTTGCCTGCAAAAATAATAAAACTTAAGTCAACTCGGCGAGGGGTA
TTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAATTGTTTTTCTCCGAGCGACTAGTCATTATGGACA
AAGCATTGATATATTTGAGAGTAGCAAGGGTGATGTTTGGTTTGCTAGTGCTTATGGCGTCTTTGTTTTGGCACATGATC
GTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCCAAATGTTTAACTGAAACGGGCAACGGTATTTGG
CTGACTTCCTCACAAGGAATCTCGCTCTACAATCCTATGGGTGAGGTGGTAAAGCATTTTGGTGATCCACACGGATTGAT
GAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATAACCAACAGCAGTTGCTGCTAGGTTCCCGTTTCG
GCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCTAATACCAATATTATCTTTAGCCAAGTGAATGTC
GATCACATTCCTGTCATGTTCGGTCGTGGTCGTTTTCAGACACTAGAATTGGAATATGGAAGTTCGATAAGCTTTTTATT
TGGTGCATTGCCAGAATCGAGAGCCTTATCATTGGAGTATCGTATTGCAGGGGATAAGGAGTGGCAGAGATTAGAAAGCG
CTCAGTTGACACTTGATCACCTGTTACCTGGACACTATCGTTTGCTGGTGAGAAATTACAGTCCAAATCCGCAAAACAGT
ATGATAAACAGTCTATCATTTATTGTGGATAACCCGTGGTATTGGTCTTCATGGGCTATTGTTCTTTACCTTTGCCTTTC
TATAGGCCTTATTGCTTTTGCTTCATGGTGGCGTTCTCGTTGGGTTACCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGG
CCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACTAATAACCAGCAGTTGCGCAAGCAATTACAAATT
CGCCATATCGTTGTTGAACAGATGTTAGATTCTATTACTCCTACATTAAATCAGCTGATTTATCGCTCCCAACTCCATCA
ACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGGCGTTACTTCGTAACGTAAGAAATGATAAAACAG
CGACTCAGTTGCTCTACGACCTATCGATAATCTTGAACTCTTGTGTGGACGGATGGCGTGAAGAGTTCGCGAAAGCGAAT
ATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATCTGCCCATTTTAACCTAGACATCATTTTCAATAC
GCTACTGTCTGATGCGGTAAAACGTCTTTACAGAAATCAAGAGCTACAAATTCATTGTTATGAAAGGGAGAAAAGACTGT
TTATTGTGATAATTGACTGTGGCGATCAGGTGCAATCCATCAATAGCGATAAGCGTATCTCTGGTTTTGAACTAGAGGAG
ATGCAACTGTTAGTACAGCGCAGTGGTGGGGAAATACATATTTTTTCATCGCCAGAACGAAATTTAGTTGAGCTTTCTTG
GCCATCAGTTGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAGAGGAGCATTCAGAGGACAAGTTTATTGATGTAA
CGGAAAAAGAGTGGCTTAAAAAAGTAGAAAAATTGGTACACAATTACTATTCAGATCCTGAATTTAGTACCTCTAGTGCG
GCTAAATCACTCTTCGTATCGGAGCGTAGTTTGCAGCGTCGTTTTAAAGCGATCACCAATAAAACATTCAAAGAGTATCT
AAATGAGATCCGCTTAGAGAAAGCGTGCCAATATTTGCTCGCAGGAGGAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGT
TTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGTTTATCGCCAACCCAATTTGTTGATGATAACGAG
TAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1041-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

49.106

99.821

0.49

Multiple sequence alignment