Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M23_RS05820 Genome accession   NZ_CP028209
Coordinates   1114894..1116027 (+) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1109894..1121027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS05790 (C7M23_01139) ywmC 1110691..1111374 (+) 684 WP_003227700.1 VWA domain-containing protein -
  C7M23_RS05795 - 1111505..1111645 (+) 141 WP_014478246.1 hypothetical protein -
  C7M23_RS05800 (C7M23_01140) ywmD 1111698..1112372 (+) 675 WP_003243553.1 VWA domain-containing protein -
  C7M23_RS05805 (C7M23_01141) - 1112466..1112627 (+) 162 WP_003227706.1 hypothetical protein -
  C7M23_RS05810 (C7M23_01142) fdhD 1112873..1113661 (+) 789 WP_015483815.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C7M23_RS05815 (C7M23_01143) moaA 1113677..1114702 (+) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  C7M23_RS05820 (C7M23_01144) rapC 1114894..1116027 (+) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  C7M23_RS05825 (C7M23_01145) - 1116180..1116659 (+) 480 WP_003244390.1 hypothetical protein -
  C7M23_RS05830 (C7M23_01146) csbD 1116732..1116920 (+) 189 WP_003227718.1 stress response protein CsbD -
  C7M23_RS21365 - 1117133..1117301 (+) 169 Protein_1111 urea ABC transporter substrate-binding protein -
  C7M23_RS05840 - 1117603..1117797 (+) 195 WP_119899878.1 hypothetical protein -
  C7M23_RS05845 (C7M23_01147) ureA 1117956..1118273 (+) 318 WP_003227724.1 urease subunit gamma -
  C7M23_RS05850 (C7M23_01148) ureB 1118270..1118644 (+) 375 WP_015251023.1 urease subunit beta -
  C7M23_RS05855 (C7M23_01149) ureC 1118641..1120350 (+) 1710 WP_003243090.1 urease subunit alpha -
  C7M23_RS05860 (C7M23_01150) ywnA 1120485..1120886 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=239718 C7M23_RS05820 WP_014478242.1 1114894..1116027(+) (rapC) [Bacillus subtilis strain SRCM102745]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=239718 C7M23_RS05820 WP_014478242.1 1114894..1116027(+) (rapC) [Bacillus subtilis strain SRCM102745]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGCTCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGATTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424