Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CG015_RS03555 Genome accession   NZ_CP022468
Coordinates   734184..734702 (+) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio anguillarum strain MHK3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 729184..739702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS03545 (CG015_03535) - 729596..732451 (+) 2856 WP_094165887.1 M16 family metallopeptidase -
  CG015_RS03550 (CG015_03540) gshA 732554..734119 (+) 1566 WP_094165898.1 glutamate--cysteine ligase -
  CG015_RS03555 (CG015_03545) luxS 734184..734702 (+) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  CG015_RS03560 (CG015_03550) - 734786..736060 (-) 1275 WP_017046996.1 HlyC/CorC family transporter -
  CG015_RS03565 (CG015_03555) - 736144..736938 (-) 795 WP_129532240.1 inner membrane protein YpjD -
  CG015_RS03570 (CG015_03560) ffh 737244..738617 (+) 1374 WP_017043706.1 signal recognition particle protein -
  CG015_RS03575 (CG015_03565) rpsP 738832..739080 (+) 249 WP_129532241.1 30S ribosomal protein S16 -
  CG015_RS03580 (CG015_03570) rimM 739110..739664 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=239712 CG015_RS03555 WP_010319518.1 734184..734702(+) (luxS) [Vibrio anguillarum strain MHK3]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=239712 CG015_RS03555 WP_010319518.1 734184..734702(+) (luxS) [Vibrio anguillarum strain MHK3]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCAGAAAAAGGGATCC
ACACTTTAGAACATTTATATGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGACGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACGGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment