Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C7M23_RS03140 Genome accession   NZ_CP028209
Coordinates   603645..603875 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM102745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 598645..608875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS03130 (C7M23_00618) spoVT 599370..599906 (-) 537 WP_003218365.1 stage V sporulation protein T -
  C7M23_RS03135 (C7M23_00619) mfd 600042..603575 (-) 3534 WP_041850256.1 transcription-repair coupling factor -
  C7M23_RS03140 (C7M23_00620) subA/fin 603645..603875 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C7M23_RS03145 (C7M23_00621) pth 603935..604501 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  C7M23_RS03150 (C7M23_00622) rplYB 604608..605222 (-) 615 WP_131226974.1 50S ribosomal protein L25/general stress protein Ctc -
  C7M23_RS03155 (C7M23_00623) prsS 605308..606261 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C7M23_RS03160 (C7M23_00624) glmU 606284..607654 (-) 1371 WP_041850257.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C7M23_RS03165 (C7M23_00625) spoVG 607847..608140 (-) 294 WP_003218346.1 septation regulator SpoVG -
  C7M23_RS03170 (C7M23_00626) ridA 608335..608712 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=239700 C7M23_RS03140 WP_003243417.1 603645..603875(-) (subA/fin) [Bacillus subtilis strain SRCM102745]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=239700 C7M23_RS03140 WP_003243417.1 603645..603875(-) (subA/fin) [Bacillus subtilis strain SRCM102745]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment