Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CG015_RS01390 Genome accession   NZ_CP022468
Coordinates   297429..298538 (+) Length   369 a.a.
NCBI ID   WP_105976463.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 292429..303538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS01370 (CG015_01365) rsmB 293345..294625 (-) 1281 WP_019283078.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CG015_RS01375 (CG015_01370) fmt 294685..295632 (-) 948 WP_017043682.1 methionyl-tRNA formyltransferase -
  CG015_RS01380 (CG015_01375) def 295649..296158 (-) 510 WP_038148727.1 peptide deformylase -
  CG015_RS01385 (CG015_01380) - 296299..297429 (+) 1131 WP_129532113.1 LysM peptidoglycan-binding domain-containing protein -
  CG015_RS01390 (CG015_01385) dprA 297429..298538 (+) 1110 WP_105976463.1 DNA-processing protein DprA Machinery gene
  CG015_RS01395 (CG015_01390) - 298541..299017 (+) 477 WP_013855530.1 DUF494 family protein -
  CG015_RS01400 (CG015_01395) - 299045..299617 (+) 573 WP_029189869.1 type I DNA topoisomerase -
  CG015_RS01405 (CG015_01400) - 299690..300829 (-) 1140 WP_129532114.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CG015_RS01410 (CG015_01405) purE 300834..301319 (-) 486 WP_010319910.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CG015_RS01415 (CG015_01410) - 301520..302077 (+) 558 WP_017043689.1 L-threonylcarbamoyladenylate synthase -
  CG015_RS01420 (CG015_01415) hemF 302098..303012 (+) 915 WP_010319908.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39877.66 Da        Isoelectric Point: 6.7182

>NTDB_id=239700 CG015_RS01390 WP_105976463.1 297429..298538(+) (dprA) [Vibrio anguillarum strain MHK3]
MEQNELAAWLAFSFVPKLGGKKLSRLASVASLAHLIDYSERELAALGLVQDQIRYLRETAPQEVEECLSWQQANESHHIL
TPFCDGYPSLLKEIVTAPPVLFVKGRITALSDPQMAIVGSRNASPDGQRVAHQFAREFVQQGLLVTSGLALGIDGHAHDG
ALQAGGETIAVLGSGLESIYPARHKKLAQRVMESGALVSEFRPKAKPRPDNFPRRNRIISGLAVGVLVVEAAEKSGSLIT
ARYAAEQGRDVFVIPGSIANPNCHGSNQLIRCGACLVQNSEQVLSEIGTLVDWSLRQKQPQPDLFSVQSDQQLPFAELLA
NVGVEATPVDILASRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGKG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=239700 CG015_RS01390 WP_105976463.1 297429..298538(+) (dprA) [Vibrio anguillarum strain MHK3]
ATGGAGCAGAACGAATTAGCGGCGTGGCTAGCATTCAGCTTTGTGCCAAAATTGGGTGGCAAGAAACTTTCTCGTCTTGC
TAGCGTCGCTTCTCTTGCTCATTTAATTGACTATTCCGAGCGGGAGTTAGCCGCGTTGGGTCTAGTTCAAGATCAAATCC
GTTATCTGCGCGAGACGGCCCCTCAAGAAGTTGAAGAATGCCTAAGTTGGCAGCAAGCTAATGAGTCTCATCATATCCTT
ACTCCATTTTGCGATGGTTATCCTTCTTTACTAAAAGAAATTGTTACCGCACCTCCGGTTTTATTTGTCAAAGGACGAAT
AACAGCACTCTCTGATCCGCAAATGGCGATCGTCGGCAGTCGTAATGCGAGCCCTGATGGCCAACGAGTTGCTCATCAGT
TTGCGCGAGAATTTGTGCAACAGGGCTTGCTTGTTACCAGTGGTTTGGCATTAGGTATTGATGGACATGCTCATGACGGT
GCGTTGCAAGCGGGTGGTGAGACGATAGCCGTGCTCGGTTCGGGCCTTGAATCTATTTACCCAGCGCGACATAAAAAATT
AGCGCAACGGGTGATGGAAAGCGGAGCATTAGTCTCGGAATTTCGTCCCAAAGCCAAACCAAGGCCAGATAACTTTCCGC
GGCGAAATCGCATTATCAGTGGGTTAGCGGTTGGTGTTTTAGTGGTGGAGGCGGCGGAGAAAAGTGGCTCGTTGATCACG
GCGCGCTATGCGGCTGAGCAAGGGCGAGATGTGTTTGTTATTCCGGGCTCCATTGCTAACCCAAATTGCCACGGTAGTAA
TCAACTTATTCGTTGTGGGGCGTGCTTGGTGCAAAACAGTGAACAAGTATTATCTGAAATTGGCACCTTAGTAGACTGGT
CATTGCGCCAAAAGCAGCCTCAACCTGATTTATTTTCTGTACAGAGCGATCAGCAATTGCCATTTGCTGAACTGTTAGCT
AACGTAGGAGTAGAGGCTACGCCTGTTGATATTCTTGCGAGCAGGACCCATATACCTGTCCATGAAGTCATGATGCAGCT
TTTAGAACTTGAGCTTTCAGGTCATGTTGTTGCCGTTTCTGGCGGCTATATTCGTAAGGGGAAGGGTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(316-362)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.481

99.187

0.64
  dprA Vibrio cholerae strain A1552

61.456

100

0.618
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.526

98.374

0.428
  dprA Neisseria meningitidis MC58

37.975

100

0.407
  dprA Neisseria meningitidis strain C311

37.975

100

0.407
  dprA Neisseria gonorrhoeae MS11

36.387

100

0.388
  dprA Acinetobacter baumannii D1279779

40.51

95.664

0.388
  dprA Neisseria gonorrhoeae strain FA1090

36.132

100

0.385
  dprA Acinetobacter baumannii strain A118

39.943

95.664

0.382
  dprA Acinetobacter baylyi ADP1

41.742

90.244

0.377
  dprA Haemophilus influenzae Rd KW20

50

74.255

0.371

Multiple sequence alignment