Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ92_RS14375 Genome accession   NZ_CP022467
Coordinates   2819891..2820496 (-) Length   201 a.a.
NCBI ID   WP_001202379.1    Uniprot ID   A0A734HUC9
Organism   Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2814891..2825496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ92_RS14360 (LFZ92_14360) helD 2815108..2817162 (-) 2055 WP_094299947.1 DNA helicase IV -
  LFZ92_RS14365 (LFZ92_14365) - 2817286..2817732 (+) 447 WP_001261216.1 YccF domain-containing protein -
  LFZ92_RS14370 (LFZ92_14370) yccS 2817751..2819904 (+) 2154 WP_023177838.1 YccS family putative transporter -
  LFZ92_RS14375 (LFZ92_14375) sxy/tfoX 2819891..2820496 (-) 606 WP_001202379.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ92_RS14380 (LFZ92_14380) sulA 2820713..2821222 (+) 510 WP_094299948.1 SOS-induced cell division inhibitor SulA -
  LFZ92_RS14385 (LFZ92_14385) ompA 2821579..2822631 (+) 1053 WP_094300661.1 porin OmpA -
  LFZ92_RS14390 (LFZ92_14390) matP 2822701..2823153 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ92_RS14395 (LFZ92_14395) - 2823339..2825099 (+) 1761 WP_094299949.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23160.85 Da        Isoelectric Point: 8.7403

>NTDB_id=239688 LFZ92_RS14375 WP_001202379.1 2819891..2820496(-) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRTLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=239688 LFZ92_RS14375 WP_001202379.1 2819891..2820496(-) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114]
ATGAGAGCACTCTCTTATGACAGAATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCCCCCGTCTGGCTCACGTTTATGAAGTGTGGACGTCCCGTGATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCACACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCGTTGGAAGGCGCAATTGTGGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A734HUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756

Multiple sequence alignment