Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C7M23_RS01045 Genome accession   NZ_CP028209
Coordinates   188284..188718 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM102745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 183284..193718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS01030 (C7M23_00205) epsK 183914..184765 (-) 852 WP_131227128.1 cyclic-di-GMP receptor EpsK -
  C7M23_RS01035 (C7M23_00206) ephJ 184746..185834 (-) 1089 WP_041850712.1 hypothetical protein -
  C7M23_RS01040 (C7M23_00207) topB 186036..188219 (-) 2184 WP_041850711.1 DNA topoisomerase III -
  C7M23_RS01045 (C7M23_00208) lrpC 188284..188718 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C7M23_RS01050 (C7M23_00209) ydzA 188903..189193 (+) 291 WP_015252794.1 DUF3817 domain-containing protein -
  C7M23_RS01055 (C7M23_00210) amj 189238..190047 (-) 810 WP_003234394.1 lipid II flippase Amj -
  C7M23_RS01060 (C7M23_00211) ydaG 190553..190975 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  C7M23_RS01065 (C7M23_00212) ydaF 191053..191604 (-) 552 WP_041850710.1 GNAT family protein -
  C7M23_RS01070 (C7M23_00213) lyxE 191692..192195 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  C7M23_RS01075 (C7M23_00214) ydaD 192211..193071 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=239683 C7M23_RS01045 WP_003246585.1 188284..188718(-) (lrpC) [Bacillus subtilis strain SRCM102745]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=239683 C7M23_RS01045 WP_003246585.1 188284..188718(-) (lrpC) [Bacillus subtilis strain SRCM102745]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCCGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1