Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M23_RS00380 Genome accession   NZ_CP028209
Coordinates   70164..70805 (-) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 65164..75805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS00365 (C7M23_00072) ydfK 65667..66356 (+) 690 WP_131227147.1 DUF554 domain-containing protein -
  C7M23_RS00370 (C7M23_00073) cesA 66559..67461 (+) 903 WP_015715308.1 carboxylesterase -
  C7M23_RS00375 (C7M23_00074) pleJ 67874..70048 (-) 2175 WP_131227146.1 MMPL family transporter -
  C7M23_RS00380 (C7M23_00075) vraR 70164..70805 (-) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  C7M23_RS00385 (C7M23_00076) ydfH 70798..72021 (-) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  C7M23_RS00390 - 72289..72432 (+) 144 WP_003243880.1 hypothetical protein -
  C7M23_RS00395 (C7M23_00077) - 72429..72608 (+) 180 WP_106074101.1 hypothetical protein -
  C7M23_RS00400 (C7M23_00078) ydfG 72694..73137 (+) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  C7M23_RS00405 (C7M23_00079) ydfF 73217..73897 (-) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  C7M23_RS00410 (C7M23_00080) ydfE 73987..74610 (+) 624 WP_041850747.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=239681 C7M23_RS00380 WP_003234184.1 70164..70805(-) (vraR) [Bacillus subtilis strain SRCM102745]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=239681 C7M23_RS00380 WP_003234184.1 70164..70805(-) (vraR) [Bacillus subtilis strain SRCM102745]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCTAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment