Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | B9128_RS16550 | Genome accession | NZ_CP022457 |
| Coordinates | 3067624..3068253 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Shigella sonnei strain 2015C-3566 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3039191..3078202 | 3067624..3068253 | within | 0 |
Gene organization within MGE regions
Location: 3039191..3078202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9128_RS27480 | ssuD | 3039396..3040543 (-) | 1148 | Protein_2935 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| B9128_RS16400 (B9128_16475) | ssuA | 3040540..3041499 (-) | 960 | WP_001244312.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| B9128_RS16405 (B9128_16480) | ssuE | 3041492..3042067 (-) | 576 | WP_001263937.1 | NADPH-dependent FMN reductase | - |
| B9128_RS16420 (B9128_16495) | - | 3042445..3043142 (+) | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| B9128_RS16425 (B9128_16500) | - | 3043200..3043742 (+) | 543 | WP_000750284.1 | fimbrial protein | - |
| B9128_RS16430 (B9128_16505) | - | 3043802..3044833 (-) | 1032 | WP_005136263.1 | IS630-like element IS630 family transposase | - |
| B9128_RS16435 (B9128_16515) | - | 3044980..3045681 (+) | 702 | WP_000845152.1 | molecular chaperone | - |
| B9128_RS27485 | - | 3045706..3048304 (+) | 2599 | Protein_2942 | fimbrial biogenesis usher protein | - |
| B9128_RS16455 (B9128_16540) | - | 3048295..3049365 (+) | 1071 | WP_001165654.1 | fimbrial protein | - |
| B9128_RS16460 (B9128_16545) | - | 3049377..3049919 (+) | 543 | WP_000712387.1 | fimbrial protein | - |
| B9128_RS16465 (B9128_16550) | - | 3049927..3050442 (+) | 516 | WP_000919489.1 | fimbrial protein | - |
| B9128_RS16470 (B9128_16555) | - | 3050408..3051145 (+) | 738 | WP_001111472.1 | fimbrial chaperone | - |
| B9128_RS16475 (B9128_16560) | pyrD | 3051256..3052266 (+) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| B9128_RS16480 (B9128_16565) | zapC | 3052440..3052982 (+) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| B9128_RS16485 (B9128_16570) | ycbX | 3052979..3054088 (-) | 1110 | WP_000224269.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| B9128_RS16490 (B9128_16575) | rlmKL | 3054332..3056440 (+) | 2109 | WP_001086556.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| B9128_RS16495 (B9128_16580) | - | 3056452..3058359 (+) | 1908 | WP_000053128.1 | ABC transporter ATP-binding protein | - |
| B9128_RS16500 (B9128_16585) | pqiA | 3058489..3059742 (+) | 1254 | WP_000333181.1 | membrane integrity-associated transporter subunit PqiA | - |
| B9128_RS16505 (B9128_16590) | pqiB | 3059747..3061387 (+) | 1641 | WP_000445523.1 | intermembrane transport protein PqiB | - |
| B9128_RS16510 (B9128_16595) | pqiC | 3061384..3061947 (+) | 564 | WP_000759123.1 | membrane integrity-associated transporter subunit PqiC | - |
| B9128_RS16515 (B9128_16600) | rmf | 3062203..3062370 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| B9128_RS16520 (B9128_16605) | fabA | 3062440..3062958 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| B9128_RS16525 (B9128_16610) | - | 3063027..3064787 (-) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| B9128_RS16530 (B9128_16615) | matP | 3064973..3065425 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| B9128_RS16535 (B9128_16620) | ompA | 3065501..3066541 (-) | 1041 | WP_000750416.1 | porin OmpA | - |
| B9128_RS16545 (B9128_16630) | sulA | 3066896..3067405 (-) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| B9128_RS16550 (B9128_16635) | sxy/tfoX | 3067624..3068253 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| B9128_RS16555 (B9128_16640) | yccS | 3068216..3070378 (-) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| B9128_RS16560 (B9128_16645) | - | 3070388..3070834 (-) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| B9128_RS16565 (B9128_16650) | helD | 3070957..3073011 (+) | 2055 | WP_000420537.1 | DNA helicase IV | - |
| B9128_RS16570 (B9128_16655) | mgsA | 3073043..3073501 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| B9128_RS16575 (B9128_16660) | - | 3073597..3074259 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| B9128_RS16590 (B9128_16675) | - | 3075209..3075622 (+) | 414 | WP_000665217.1 | CoA-binding protein | - |
| B9128_RS16595 (B9128_16680) | hspQ | 3075667..3075984 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| B9128_RS16600 (B9128_16685) | rlmI | 3076042..3077232 (-) | 1191 | Protein_2970 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| B9128_RS16605 (B9128_16690) | yccX | 3077327..3077605 (+) | 279 | WP_000048252.1 | acylphosphatase | - |
| B9128_RS16610 (B9128_16695) | tusE | 3077602..3077931 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=239658 B9128_RS16550 WP_000839153.1 3067624..3068253(+) (sxy/tfoX) [Shigella sonnei strain 2015C-3566]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=239658 B9128_RS16550 WP_000839153.1 3067624..3068253(+) (sxy/tfoX) [Shigella sonnei strain 2015C-3566]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |