Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M17_RS17950 Genome accession   NZ_CP028202
Coordinates   3431929..3433062 (+) Length   377 a.a.
NCBI ID   WP_122895654.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3426929..3438062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS17920 (C7M17_03538) ywmC 3427737..3428420 (+) 684 WP_003227700.1 VWA domain-containing protein -
  C7M17_RS17925 - 3428551..3428691 (+) 141 WP_160245478.1 hypothetical protein -
  C7M17_RS17930 (C7M17_03539) ywmD 3428744..3429418 (+) 675 WP_003243553.1 VWA domain-containing protein -
  C7M17_RS17935 (C7M17_03540) - 3429513..3429674 (+) 162 WP_122895652.1 hypothetical protein -
  C7M17_RS17940 (C7M17_03541) fdhD 3429907..3430695 (+) 789 WP_021480805.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C7M17_RS17945 (C7M17_03542) moaA 3430711..3431736 (+) 1026 WP_122895653.1 GTP 3',8-cyclase MoaA -
  C7M17_RS17950 (C7M17_03543) rapC 3431929..3433062 (+) 1134 WP_122895654.1 response regulator aspartate phosphatase RapB Regulator
  C7M17_RS17955 (C7M17_03544) - 3433218..3433697 (+) 480 WP_003244390.1 hypothetical protein -
  C7M17_RS17960 (C7M17_03545) csbD 3433770..3433958 (+) 189 WP_003227718.1 stress response protein CsbD -
  C7M17_RS22755 - 3434171..3434383 (+) 213 Protein_3529 urea ABC transporter substrate-binding protein -
  C7M17_RS17970 - 3434686..3434808 (+) 123 WP_250628971.1 hypothetical protein -
  C7M17_RS17975 (C7M17_03546) ureA 3435002..3435319 (+) 318 WP_003227724.1 urease subunit gamma -
  C7M17_RS17980 (C7M17_03547) ureB 3435316..3435690 (+) 375 WP_003227726.1 urease subunit beta -
  C7M17_RS17985 (C7M17_03548) ureC 3435687..3437396 (+) 1710 WP_122895656.1 urease subunit alpha -
  C7M17_RS17990 (C7M17_03549) ywnA 3437531..3437932 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45096.20 Da        Isoelectric Point: 4.7546

>NTDB_id=239657 C7M17_RS17950 WP_122895654.1 3431929..3433062(+) (rapC) [Bacillus subtilis strain SRCM102754]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQRRNDFFSLTKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=239657 C7M17_RS17950 WP_122895654.1 3431929..3433062(+) (rapC) [Bacillus subtilis strain SRCM102754]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAGACGAA
ACGACTTCTTTAGTCTGACAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422