Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C7M17_RS15400 Genome accession   NZ_CP028202
Coordinates   2938897..2939127 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM102754     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2933897..2944127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS15390 (C7M17_03041) spoVT 2934622..2935158 (-) 537 WP_003218365.1 stage V sporulation protein T -
  C7M17_RS15395 (C7M17_03042) mfd 2935294..2938827 (-) 3534 WP_015253006.1 transcription-repair coupling factor -
  C7M17_RS15400 (C7M17_03043) subA/fin 2938897..2939127 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C7M17_RS15405 (C7M17_03044) pth 2939187..2939753 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  C7M17_RS15410 (C7M17_03045) rplYB 2939860..2940474 (-) 615 WP_122895838.1 50S ribosomal protein L25/general stress protein Ctc -
  C7M17_RS15415 (C7M17_03046) prsS 2940559..2941512 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C7M17_RS15420 (C7M17_03047) glmU 2941535..2942905 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C7M17_RS15425 (C7M17_03048) spoVG 2943098..2943391 (-) 294 WP_003218346.1 septation regulator SpoVG -
  C7M17_RS15430 (C7M17_03049) ridA 2943586..2943963 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=239640 C7M17_RS15400 WP_003243417.1 2938897..2939127(-) (subA/fin) [Bacillus subtilis strain SRCM102754]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=239640 C7M17_RS15400 WP_003243417.1 2938897..2939127(-) (subA/fin) [Bacillus subtilis strain SRCM102754]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1