Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C7M17_RS06640 Genome accession   NZ_CP028202
Coordinates   1233806..1234237 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM102754     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228806..1239237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS06630 (C7M17_01305) hexA 1230291..1232867 (-) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene
  C7M17_RS06635 (C7M17_01306) cotE 1233000..1233545 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  C7M17_RS06640 (C7M17_01307) ymcA 1233806..1234237 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C7M17_RS06645 (C7M17_01308) miaB 1234239..1235768 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C7M17_RS06650 (C7M17_01309) kbl 1235916..1237094 (-) 1179 WP_122894522.1 glycine C-acetyltransferase -
  C7M17_RS06655 (C7M17_01310) tdh 1237107..1238150 (-) 1044 WP_122894523.1 L-threonine 3-dehydrogenase -
  C7M17_RS06660 (C7M17_01311) spoVS 1238416..1238676 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=239573 C7M17_RS06640 WP_003231834.1 1233806..1234237(-) (ymcA) [Bacillus subtilis strain SRCM102754]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=239573 C7M17_RS06640 WP_003231834.1 1233806..1234237(-) (ymcA) [Bacillus subtilis strain SRCM102754]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGATGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1