Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CGZ63_RS12700 Genome accession   NZ_CP022445
Coordinates   2366894..2367172 (+) Length   92 a.a.
NCBI ID   WP_025687553.1    Uniprot ID   -
Organism   Bacillus cereus C1L     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2361894..2372172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ63_RS12680 - 2363568..2364377 (+) 810 WP_000678369.1 papain-like cysteine protease family protein -
  CGZ63_RS12685 - 2364403..2365005 (+) 603 WP_000517271.1 hypothetical protein -
  CGZ63_RS12690 - 2365249..2365500 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  CGZ63_RS12695 - 2365875..2366753 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  CGZ63_RS12700 abrB 2366894..2367172 (+) 279 WP_025687553.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CGZ63_RS12705 - 2367788..2369037 (+) 1250 Protein_2369 hypothetical protein -
  CGZ63_RS12710 - 2369105..2369863 (+) 759 WP_000347994.1 TSUP family transporter -
  CGZ63_RS12715 - 2370116..2370775 (+) 660 WP_025687555.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10360.24 Da        Isoelectric Point: 10.0092

>NTDB_id=239555 CGZ63_RS12700 WP_025687553.1 2366894..2367172(+) (abrB) [Bacillus cereus C1L]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEIFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=239555 CGZ63_RS12700 WP_025687553.1 2366894..2367172(+) (abrB) [Bacillus cereus C1L]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATTTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5

Multiple sequence alignment