Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CGZ63_RS06775 Genome accession   NZ_CP022445
Coordinates   1260129..1260452 (-) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus cereus C1L     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255129..1265452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ63_RS06745 - 1255139..1255366 (+) 228 WP_000251856.1 hypothetical protein -
  CGZ63_RS06750 - 1255519..1256805 (+) 1287 WP_025690099.1 D-alanyl-D-alanine carboxypeptidase family protein -
  CGZ63_RS06755 - 1256996..1257565 (+) 570 WP_000767792.1 signal peptidase I -
  CGZ63_RS06760 - 1257626..1258213 (+) 588 WP_000172852.1 CalY family protein -
  CGZ63_RS06765 - 1258333..1259091 (+) 759 WP_089607290.1 DUF4047 domain-containing protein -
  CGZ63_RS06770 calY 1259469..1260062 (+) 594 WP_000053714.1 biofilm matrix protein CalY -
  CGZ63_RS06775 sinR 1260129..1260452 (-) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  CGZ63_RS06780 - 1260532..1260666 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  CGZ63_RS06785 inhA1 1261009..1263399 (+) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  CGZ63_RS06790 - 1263571..1264935 (+) 1365 Protein_1219 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=239550 CGZ63_RS06775 WP_000578884.1 1260129..1260452(-) (sinR) [Bacillus cereus C1L]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=239550 CGZ63_RS06775 WP_000578884.1 1260129..1260452(-) (sinR) [Bacillus cereus C1L]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment