Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CGZ63_RS00225 Genome accession   NZ_CP022445
Coordinates   40103..40387 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus C1L     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35103..45387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ63_RS00190 tmk 35295..35921 (+) 627 WP_000677218.1 dTMP kinase -
  CGZ63_RS00195 holB 35957..36940 (+) 984 WP_000169564.1 DNA polymerase III subunit delta' -
  CGZ63_RS00200 - 36946..37773 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  CGZ63_RS00205 yabA 37788..38138 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  CGZ63_RS00210 - 38221..38961 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CGZ63_RS00215 - 38948..39238 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  CGZ63_RS00220 rsmI 39207..40082 (+) 876 WP_025686737.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CGZ63_RS00225 abrB 40103..40387 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CGZ63_RS00230 metG 40847..42856 (+) 2010 WP_088346484.1 methionine--tRNA ligase -
  CGZ63_RS00235 - 43023..43790 (+) 768 WP_000895851.1 TatD family hydrolase -
  CGZ63_RS00240 rnmV 44005..44562 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=239533 CGZ63_RS00225 WP_000843036.1 40103..40387(-) (abrB) [Bacillus cereus C1L]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=239533 CGZ63_RS00225 WP_000843036.1 40103..40387(-) (abrB) [Bacillus cereus C1L]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAA
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment