Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CFK40_RS16555 Genome accession   NZ_CP022437
Coordinates   3483011..3484825 (-) Length   604 a.a.
NCBI ID   WP_089533510.1    Uniprot ID   A0A221MFX1
Organism   Virgibacillus necropolis strain LMG 19488     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3478011..3489825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK40_RS16530 (CFK40_16530) - 3478270..3479079 (-) 810 WP_089533505.1 NAD kinase -
  CFK40_RS16535 (CFK40_16535) - 3479100..3479708 (-) 609 WP_089533506.1 GTP pyrophosphokinase family protein -
  CFK40_RS16540 (CFK40_16540) - 3480141..3480716 (+) 576 WP_089533507.1 CYTH domain-containing protein -
  CFK40_RS16545 (CFK40_16545) - 3480785..3481165 (+) 381 WP_089533508.1 globin -
  CFK40_RS16550 (CFK40_16550) - 3481308..3482201 (+) 894 WP_089533509.1 ClpXP adapter SpxH family protein -
  CFK40_RS21390 - 3482750..3482917 (+) 168 WP_405196598.1 hypothetical protein -
  CFK40_RS16555 (CFK40_16555) pepF 3483011..3484825 (-) 1815 WP_089533510.1 oligoendopeptidase F Regulator
  CFK40_RS16560 (CFK40_16560) - 3485028..3486200 (-) 1173 WP_089533511.1 competence protein CoiA -
  CFK40_RS16565 (CFK40_16565) mecA 3486292..3486981 (-) 690 WP_089533512.1 adaptor protein MecA -
  CFK40_RS16570 (CFK40_16570) spxA 3487317..3487712 (-) 396 WP_089060076.1 transcriptional regulator SpxA -
  CFK40_RS16575 (CFK40_16575) - 3487995..3488588 (-) 594 WP_089533513.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69665.31 Da        Isoelectric Point: 4.7055

>NTDB_id=239448 CFK40_RS16555 WP_089533510.1 3483011..3484825(-) (pepF) [Virgibacillus necropolis strain LMG 19488]
MAKATKELPKRSELPKELTWDLEDIFATDEKWEQELKSLKQDIPQIEEYAGKLSDSAQALYDVLKLQDDLSQRLGKLFTY
AHMRNDEDTTNSFYQEMNAKAENVLTLASSSMSFLVPEILTIEESKLKQFQSEKEELALYKQTLDEITRQRAHVLSQKEE
ALLAEASEPIENASQTFGMLNNADLTFPAIKNEDGEEIDLTHGRYLGFLESKDRRVREDAFKAMYSTYGSFKNTFSSTLT
GTIKKDNFNAKVRNYDSARHAALDGNNIPEQVYENLVEAVNDKIHLLHRYSALRKKVLELDELHMYDMYTPLVKNVEMKI
PYQKAQEHVVESLAPLGEEYVNIVKEGYKNRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDNVNDLFTLAHELGHSVH
SYYTRKSQPFRYGNYSIFVAEVASTCNEALLNEYMLNHLEDEKEKLYLLNHFLEGFRGTVFRQTMFAEFEHDIHKRMQDG
EALTADKLTEIYYALNKKYFGDEVVSDEEIGLEWSRIPHFYMNYYVFQYATGYSAATALASQILTDEDGTAVERYLNFLK
AGSSDFPIEVLKKAGVDMTSKQPILEALDVFEEKLEEMEKLLLK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=239448 CFK40_RS16555 WP_089533510.1 3483011..3484825(-) (pepF) [Virgibacillus necropolis strain LMG 19488]
TTGGCTAAAGCAACAAAGGAATTACCAAAAAGAAGTGAGTTACCTAAAGAACTAACATGGGATCTTGAAGATATTTTTGC
AACTGATGAGAAATGGGAACAAGAACTAAAAAGCTTGAAGCAAGATATCCCTCAGATTGAAGAATACGCTGGGAAATTAT
CTGATTCTGCGCAAGCATTATATGACGTGTTAAAGCTCCAAGACGATTTATCACAGCGTTTGGGCAAGCTTTTTACATAT
GCGCATATGCGTAATGATGAAGATACGACTAATTCATTTTACCAGGAGATGAATGCAAAGGCCGAAAATGTGCTAACACT
TGCATCAAGTTCAATGAGTTTCCTGGTCCCTGAAATTTTAACAATTGAGGAATCGAAGCTGAAGCAATTTCAATCAGAAA
AAGAGGAATTAGCTTTATATAAGCAAACATTAGATGAAATTACGCGTCAACGTGCACATGTATTGAGCCAAAAAGAAGAA
GCATTACTTGCAGAGGCTTCAGAACCGATTGAAAACGCATCGCAAACATTTGGTATGTTAAACAATGCCGATCTTACTTT
CCCAGCGATTAAAAATGAGGACGGAGAAGAAATAGACTTAACACATGGACGTTATCTCGGATTTTTAGAATCAAAAGACC
GTAGAGTACGCGAGGATGCATTCAAGGCAATGTACAGCACATATGGTAGCTTTAAAAATACGTTCTCTTCCACTTTAACC
GGAACTATTAAGAAGGATAACTTTAATGCGAAGGTACGTAATTATGATTCAGCAAGACACGCTGCATTGGATGGAAACAA
TATTCCTGAGCAGGTATATGAAAATTTGGTTGAAGCGGTGAATGACAAAATTCATTTACTCCACCGATACTCTGCGTTGC
GTAAAAAGGTATTGGAACTAGATGAACTGCATATGTATGACATGTACACACCACTCGTGAAAAATGTTGAAATGAAAATT
CCGTATCAGAAGGCACAGGAACATGTAGTGGAAAGCCTTGCACCACTTGGGGAAGAGTATGTCAACATCGTCAAAGAAGG
CTACAAAAATCGCTGGATTGATGTGGAGGAAAACAAAGGAAAGCGCAGTGGAGCTTATTCATCAGGAGCATATGGTACAA
ATCCATATATCTTACTGAACTGGCAGGATAATGTGAATGATTTATTCACACTCGCACATGAACTTGGCCATTCCGTTCAC
AGCTATTATACAAGAAAGTCGCAACCATTCCGTTATGGAAACTATTCTATTTTTGTGGCTGAGGTTGCGTCAACCTGTAA
TGAAGCACTGTTAAACGAATACATGTTAAACCATTTGGAAGATGAAAAAGAAAAACTATACTTGTTGAATCATTTCTTAG
AAGGTTTCCGTGGAACGGTTTTCCGCCAAACGATGTTCGCAGAATTTGAACATGATATTCATAAGCGAATGCAAGATGGC
GAGGCACTAACTGCTGATAAATTGACGGAAATTTATTATGCGTTGAACAAAAAATATTTCGGTGATGAAGTTGTTTCAGA
TGAGGAAATCGGGCTTGAATGGTCACGCATCCCACACTTTTACATGAATTATTATGTATTCCAATATGCTACCGGCTATT
CGGCGGCAACTGCTTTAGCTAGTCAAATCTTAACCGATGAAGATGGCACGGCGGTTGAACGCTATTTAAACTTCTTGAAA
GCGGGAAGTAGTGATTTTCCAATAGAAGTGTTGAAAAAAGCTGGTGTCGACATGACGTCAAAACAACCAATACTTGAGGC
GTTGGATGTTTTTGAAGAAAAGTTAGAAGAAATGGAAAAACTGTTGTTGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A221MFX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

98.675

0.492

Multiple sequence alignment