Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C7M16_RS07990 Genome accession   NZ_CP028201
Coordinates   1560558..1560989 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM102753     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555558..1565989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS07970 (C7M16_01572) spoVS 1556119..1556379 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  C7M16_RS07975 (C7M16_01573) tdh 1556645..1557688 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  C7M16_RS07980 (C7M16_01574) kbl 1557701..1558879 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  C7M16_RS07985 (C7M16_01575) miaB 1559027..1560556 (+) 1530 WP_160221593.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C7M16_RS07990 (C7M16_01576) ymcA 1560558..1560989 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C7M16_RS07995 (C7M16_01577) cotE 1561243..1561788 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  C7M16_RS08000 (C7M16_01578) hexA 1561921..1564497 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=239443 C7M16_RS07990 WP_003231834.1 1560558..1560989(+) (ymcA) [Bacillus subtilis strain SRCM102753]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=239443 C7M16_RS07990 WP_003231834.1 1560558..1560989(+) (ymcA) [Bacillus subtilis strain SRCM102753]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1