Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CFK40_RS09855 Genome accession   NZ_CP022437
Coordinates   2082416..2084140 (+) Length   574 a.a.
NCBI ID   WP_089532145.1    Uniprot ID   -
Organism   Virgibacillus necropolis strain LMG 19488     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2077416..2089140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK40_RS09830 (CFK40_09830) - 2078662..2078892 (+) 231 WP_089532141.1 exodeoxyribonuclease VII small subunit -
  CFK40_RS09835 (CFK40_09835) - 2078895..2079779 (+) 885 WP_227001907.1 polyprenyl synthetase family protein -
  CFK40_RS09840 (CFK40_09840) - 2080455..2081054 (+) 600 WP_089532142.1 hypothetical protein -
  CFK40_RS09845 (CFK40_09845) - 2081072..2081905 (+) 834 WP_152640117.1 TlyA family RNA methyltransferase -
  CFK40_RS09850 (CFK40_09850) ahrC 2081941..2082390 (+) 450 WP_089532144.1 transcriptional regulator AhrC/ArgR -
  CFK40_RS09855 (CFK40_09855) recN 2082416..2084140 (+) 1725 WP_089532145.1 DNA repair protein RecN Machinery gene
  CFK40_RS09860 (CFK40_09860) spoIVB 2084419..2085663 (+) 1245 WP_405196589.1 SpoIVB peptidase -
  CFK40_RS09865 (CFK40_09865) spo0A 2085943..2086722 (+) 780 WP_089532147.1 sporulation transcription factor Spo0A -
  CFK40_RS09870 (CFK40_09870) - 2086853..2087824 (+) 972 WP_168927227.1 tyrosine-type recombinase/integrase -
  CFK40_RS09875 (CFK40_09875) - 2087956..2088696 (+) 741 WP_089532148.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 65245.43 Da        Isoelectric Point: 5.2752

>NTDB_id=239441 CFK40_RS09855 WP_089532145.1 2082416..2084140(+) (recN) [Virgibacillus necropolis strain LMG 19488]
MLTELSIHDFAIIDNLSLTFHEGLTVLTGETGAGKSIIIDAVQLLVGGRGSVEFVRHGTTKAEIEGLFSIDNQKHPIFKI
GKDFGIEIPDNMVVLQRTITSRGKSICRVNGKLVTLAILKEFGKTLIDIHSQHETQALMDPENHIGLLDLYDTQVINQAK
LEYHKLYERLQLLQKRYKELSENEQEMAHRLDLLTFQMDELGQANLEPNEDTTLEEERSNLANFDRIYVGIQDAYNALYG
DQKGIEWLSMAVQSLENNKNYDPFIAKKAEELANQFYMVEELSFDLRNYSDTLQYDPTRLNEIEERLSEINRLKKKYGST
VNEIIDYMGKIQEEMEEITNKDSHLAKLQGQINETKQDAYLEAKQLHDIRKKAAKELTKEIHYELKDLYLDKATFSIAFT
SKEDIEAENGLNQALKLHKNGFDFITFLISTNPGEPLKELNKVASGGELSRIMLALKKIFAKHQGVTSVIFDEVDTGVSG
RVAQAIAEKIIRVSEQSQVLCITHLPQVASMADTHNLIEKVEKDKRTITYVKELSKVQQIDELSRMITGAKLTETAKQHA
KEMLLLADSIKQKI

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=239441 CFK40_RS09855 WP_089532145.1 2082416..2084140(+) (recN) [Virgibacillus necropolis strain LMG 19488]
ATGTTAACAGAACTATCTATTCATGATTTCGCAATAATTGATAATTTATCCTTAACATTTCATGAAGGTTTGACCGTCTT
AACAGGCGAGACGGGTGCAGGTAAATCAATTATTATCGATGCAGTACAGTTATTAGTTGGTGGACGCGGATCAGTTGAAT
TTGTAAGACATGGTACAACAAAAGCTGAAATAGAAGGTTTATTTTCAATCGATAATCAAAAACATCCTATATTTAAAATT
GGAAAAGATTTCGGTATCGAAATACCAGATAACATGGTTGTATTACAACGTACCATTACTTCGAGAGGTAAAAGTATTTG
CCGAGTCAATGGTAAATTAGTTACCTTGGCCATACTAAAAGAATTCGGAAAAACACTTATTGATATACATAGTCAGCATG
AAACTCAAGCCTTAATGGACCCAGAAAATCATATTGGCCTACTCGACTTATATGATACACAAGTGATTAATCAAGCGAAA
CTTGAATACCATAAGTTATATGAACGGTTGCAACTGCTTCAAAAAAGGTATAAAGAACTTAGTGAAAATGAACAAGAAAT
GGCGCATCGTTTAGACCTTTTAACTTTTCAAATGGATGAACTAGGACAAGCCAACTTAGAGCCAAATGAAGACACTACAT
TGGAGGAAGAGCGAAGTAATTTGGCTAACTTTGATCGAATCTATGTTGGTATTCAGGACGCTTATAATGCTTTATATGGT
GATCAAAAAGGAATAGAATGGCTAAGTATGGCAGTGCAATCTCTTGAAAATAATAAGAATTATGATCCGTTTATCGCCAA
AAAAGCAGAAGAGCTTGCAAATCAGTTCTACATGGTCGAGGAATTATCATTCGATTTACGTAACTATAGTGACACACTAC
AGTATGATCCTACACGGTTAAATGAAATTGAAGAAAGATTAAGCGAAATAAATCGGTTGAAGAAGAAATATGGTTCTACA
GTCAATGAAATTATTGACTACATGGGAAAGATTCAAGAAGAGATGGAAGAAATAACAAACAAGGATTCCCATCTTGCGAA
ACTGCAAGGTCAAATTAATGAAACAAAACAAGACGCTTATTTAGAAGCTAAGCAACTTCATGATATTCGAAAAAAGGCTG
CAAAAGAATTAACAAAAGAAATTCATTATGAACTAAAAGATTTATATTTGGATAAGGCTACCTTTTCCATAGCATTTACA
AGCAAGGAAGACATCGAAGCTGAAAATGGTCTTAATCAAGCTTTAAAGTTACATAAAAATGGATTTGATTTTATTACATT
TTTAATTTCGACTAATCCGGGTGAACCACTTAAAGAACTAAACAAAGTTGCTTCTGGCGGAGAACTGTCCAGAATAATGT
TAGCTCTTAAAAAAATATTTGCGAAACACCAGGGCGTAACAAGCGTAATCTTTGACGAAGTTGATACTGGAGTTAGCGGA
CGAGTTGCTCAGGCCATTGCTGAAAAAATTATTCGTGTATCAGAGCAATCGCAGGTATTATGCATTACCCATTTACCTCA
GGTTGCCTCAATGGCAGATACACACAACTTAATTGAAAAAGTTGAAAAAGATAAGCGGACAATCACTTATGTGAAGGAGC
TTTCAAAAGTTCAACAAATTGATGAATTAAGCAGAATGATTACAGGAGCAAAGTTAACGGAGACAGCAAAACAACATGCA
AAAGAGATGCTTCTTTTAGCGGATTCTATAAAACAGAAAATATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.007

100

0.54

Multiple sequence alignment