Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C7M16_RS07005 Genome accession   NZ_CP028201
Coordinates   1358951..1359976 (+) Length   341 a.a.
NCBI ID   WP_160221560.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353951..1364976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS06970 (C7M16_01374) ylbE 1354251..1354490 (+) 240 WP_003232231.1 YlbE-like family protein -
  C7M16_RS06975 (C7M16_01375) ylbF 1354606..1355055 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M16_RS06980 (C7M16_01376) ylbG 1355110..1355382 (+) 273 WP_009967171.1 YlbG family protein -
  C7M16_RS06985 (C7M16_01377) rsmD 1355705..1356259 (+) 555 WP_160221559.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M16_RS06990 (C7M16_01378) coaD 1356264..1356749 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M16_RS06995 (C7M16_01379) spoVV 1356760..1357986 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  C7M16_RS07000 (C7M16_01380) ylbK 1358167..1358949 (+) 783 WP_003232221.1 patatin family protein -
  C7M16_RS07005 (C7M16_01381) sepM 1358951..1359976 (+) 1026 WP_160221560.1 protease DdcP Regulator
  C7M16_RS07010 (C7M16_01382) tmcAL 1359993..1361240 (-) 1248 WP_160221561.1 nucleotidyltransferase -
  C7M16_RS07015 (C7M16_01383) - 1361237..1361422 (-) 186 WP_003232215.1 hypothetical protein -
  C7M16_RS07020 (C7M16_01384) ylbN 1361450..1361968 (+) 519 WP_110109387.1 DUF177 domain-containing protein -
  C7M16_RS07025 (C7M16_01385) rpmF 1361990..1362169 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  C7M16_RS07030 (C7M16_01386) gerR 1362315..1362896 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  C7M16_RS07035 (C7M16_01387) ylbP 1362953..1363435 (-) 483 WP_003244940.1 N-acetyltransferase -
  C7M16_RS07040 (C7M16_01388) panEA 1363595..1364491 (+) 897 WP_160221562.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37621.21 Da        Isoelectric Point: 6.5347

>NTDB_id=239432 C7M16_RS07005 WP_160221560.1 1358951..1359976(+) (sepM) [Bacillus subtilis strain SRCM102753]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLALKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=239432 C7M16_RS07005 WP_160221560.1 1358951..1359976(+) (sepM) [Bacillus subtilis strain SRCM102753]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTGCGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATA
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402