Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M16_RS05620 Genome accession   NZ_CP028201
Coordinates   1104082..1105218 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099082..1110218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS05600 (C7M16_01099) uxaA 1099532..1101025 (+) 1494 WP_160221515.1 altronate dehydratase family protein -
  C7M16_RS05605 (C7M16_01100) yjnA 1101064..1101828 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  C7M16_RS05610 (C7M16_01101) bstD 1102053..1102517 (-) 465 WP_014479541.1 DinB family protein -
  C7M16_RS05615 (C7M16_01102) yjoB 1102666..1103937 (+) 1272 WP_160221516.1 ATPase YjoB -
  C7M16_RS05620 (C7M16_01103) rapC 1104082..1105218 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  C7M16_RS05625 (C7M16_01104) phrA 1105208..1105342 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  C7M16_RS05630 (C7M16_01105) yjpA 1105373..1105630 (-) 258 WP_003232731.1 YciI family protein -
  C7M16_RS05635 (C7M16_01106) xlyB 1105751..1106704 (+) 954 WP_015252290.1 N-acetylmuramoyl-L-alanine amidase -
  C7M16_RS05640 (C7M16_01107) yjqA 1106744..1107121 (-) 378 WP_160221517.1 PH domain-containing protein -
  C7M16_RS05645 (C7M16_01108) pghB 1107226..1107828 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  C7M16_RS05650 (C7M16_01109) xpdC 1107905..1108741 (+) 837 WP_041351205.1 manganese catalase family protein -
  C7M16_RS05655 (C7M16_01110) xkdA 1108785..1109381 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  C7M16_RS05660 (C7M16_01111) xre 1109544..1109885 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=239422 C7M16_RS05620 WP_015252291.1 1104082..1105218(+) (rapC) [Bacillus subtilis strain SRCM102753]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=239422 C7M16_RS05620 WP_015252291.1 1104082..1105218(+) (rapC) [Bacillus subtilis strain SRCM102753]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418