Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   TRNA_RS36025 Genome accession   NC_006270
Coordinates   2818622..2819371 (-) Length   249 a.a.
NCBI ID   WP_011198164.1    Uniprot ID   Q8VQ80
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2813622..2824371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS36000 (BL00638) mreC 2813895..2814803 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  TRNA_RS36005 (BL00637) - 2814834..2815844 (-) 1011 WP_003184042.1 rod shape-determining protein -
  TRNA_RS36010 (BL00636) ysxA/radC 2815932..2816606 (-) 675 WP_003184045.1 RadC family protein Machinery gene
  TRNA_RS36015 (BL00635) - 2816661..2817233 (-) 573 WP_003184048.1 Maf family protein -
  TRNA_RS36020 (BL00634) - 2817387..2818418 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  TRNA_RS36025 (BL00633) comC 2818622..2819371 (-) 750 WP_011198164.1 prepilin peptidase Machinery gene
  TRNA_RS36030 (BL00632) - 2819514..2820812 (-) 1299 WP_009329287.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  TRNA_RS36035 (BL00631) - 2820894..2823536 (-) 2643 WP_009329289.1 valine--tRNA ligase -
  TRNA_RS36040 (BL00644) - 2823998..2824189 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26954.53 Da        Isoelectric Point: 8.7373

>NTDB_id=23942 TRNA_RS36025 WP_011198164.1 2818622..2819371(-) (comC) [Bacillus licheniformis DSM 13 = ATCC 14580]
MFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=23942 TRNA_RS36025 WP_011198164.1 2818622..2819371(-) (comC) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTCCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)

Type IV leader peptidase family (Peptidase_A24)

(102-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.347

97.189

0.47

Multiple sequence alignment