Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CGZ53_RS09015 Genome accession   NZ_CP022435
Coordinates   1777002..1777715 (+) Length   237 a.a.
NCBI ID   WP_100912303.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772002..1782715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS09005 (CGZ53_08995) treC 1773098..1774729 (-) 1632 WP_015912053.1 alpha,alpha-phosphotrehalase -
  CGZ53_RS09010 (CGZ53_09000) treP 1774797..1776782 (-) 1986 WP_046389733.1 PTS system trehalose-specific EIIBC component -
  CGZ53_RS09015 (CGZ53_09005) treR 1777002..1777715 (+) 714 WP_100912303.1 trehalose operon repressor Regulator
  CGZ53_RS09020 (CGZ53_09010) - 1777734..1778060 (-) 327 WP_037593124.1 winged helix-turn-helix transcriptional regulator -
  CGZ53_RS09025 (CGZ53_09015) - 1778263..1779123 (+) 861 WP_100912304.1 VOC family protein -
  CGZ53_RS09030 (CGZ53_09020) yaaA 1779176..1779907 (+) 732 WP_100912305.1 peroxide stress protein YaaA -
  CGZ53_RS09035 (CGZ53_09025) nrdG 1780022..1780636 (-) 615 WP_037593122.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  CGZ53_RS09040 (CGZ53_09030) - 1780641..1781144 (-) 504 WP_046388393.1 GNAT family N-acetyltransferase -
  CGZ53_RS09045 (CGZ53_09035) - 1781113..1782093 (-) 981 WP_037593121.1 Gfo/Idh/MocA family protein -
  CGZ53_RS09520 (CGZ53_09040) - 1782119..1782268 (-) 150 WP_015912062.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27669.95 Da        Isoelectric Point: 9.2840

>NTDB_id=239403 CGZ53_RS09015 WP_100912303.1 1777002..1777715(+) (treR) [Streptococcus uberis strain NZ01]
MKKYEQIYKDLESKIAKEIYKIDDFLPTEMALSEEYQASRDTIRKALTLLTKAGLVKKRQGRGTQVIKHHQILFPISELT
SYQELVTFFNMDSKTNVIAIDKLIVDNDTSKLTGFQVNDIIWRVTRQRVVDGVASVLDIDYLSKKLIPTITREIAEHSLY
HYLEKELHLDIDFALKEVTIDQVNEKDKILLDLGSDKHVVSVKSKVYLSTNEQFQFTESRHKLEKFKFVDFARRKPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=239403 CGZ53_RS09015 WP_100912303.1 1777002..1777715(+) (treR) [Streptococcus uberis strain NZ01]
ATGAAGAAATATGAACAAATTTATAAAGATTTAGAATCTAAAATCGCAAAAGAAATCTACAAAATTGACGACTTCTTACC
CACAGAAATGGCCTTAAGTGAAGAGTACCAGGCTAGTCGTGACACTATTCGAAAAGCCCTCACTCTCCTAACAAAAGCCG
GACTGGTCAAAAAACGACAAGGACGGGGTACACAAGTTATCAAGCATCATCAAATTCTTTTCCCAATTTCAGAACTGACC
AGTTACCAAGAACTCGTTACTTTTTTTAATATGGATTCCAAAACGAACGTGATTGCCATCGATAAATTAATTGTGGATAA
TGATACCTCAAAATTAACAGGTTTTCAGGTTAATGACATTATTTGGAGGGTCACACGACAAAGAGTTGTCGATGGTGTCG
CATCCGTCCTAGACATCGATTACCTCAGTAAAAAACTAATCCCTACAATAACTCGTGAAATTGCTGAGCACTCCTTATAT
CACTATCTCGAAAAAGAACTTCATCTAGACATTGACTTTGCACTGAAAGAAGTAACCATTGATCAAGTTAACGAGAAAGA
TAAAATACTTCTAGACTTAGGATCAGATAAACATGTTGTCTCTGTCAAATCCAAGGTTTATCTCTCAACTAATGAACAAT
TTCAATTTACCGAGAGTCGTCATAAGCTAGAAAAATTCAAATTTGTAGATTTTGCGCGAAGAAAACCAAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(92-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671

Multiple sequence alignment