Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M16_RS04010 Genome accession   NZ_CP028201
Coordinates   797379..798026 (+) Length   215 a.a.
NCBI ID   WP_021479675.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 792379..803026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS03995 (C7M16_00789) glpD 792550..794217 (+) 1668 WP_124073078.1 glycerol-3-phosphate dehydrogenase -
  C7M16_RS04000 (C7M16_00790) pgcA 794349..796094 (+) 1746 WP_124073079.1 phosphoglucomutase -
  C7M16_RS04005 (C7M16_00791) yhcY 796243..797382 (+) 1140 WP_137200676.1 two-component system sensor histidine kinase YhcY -
  C7M16_RS04010 (C7M16_00792) vraR 797379..798026 (+) 648 WP_021479675.1 two-component system response regulator YhcZ Regulator
  C7M16_RS04015 (C7M16_00793) yhdA 798023..798547 (+) 525 WP_069322476.1 FMN-dependent NADPH-azoreductase -
  C7M16_RS04020 (C7M16_00794) yhdB 798562..798804 (-) 243 WP_003233373.1 YhdB family protein -
  C7M16_RS04025 (C7M16_00795) yhdC 799005..799328 (+) 324 WP_024573280.1 YqzG/YhdC family protein -
  C7M16_RS04030 (C7M16_00796) lytF 799370..800836 (-) 1467 WP_086343628.1 peptidoglycan endopeptidase LytF -
  C7M16_RS04035 (C7M16_00797) nsrR 800990..801430 (-) 441 WP_137200678.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24163.80 Da        Isoelectric Point: 6.3039

>NTDB_id=239401 C7M16_RS04010 WP_021479675.1 797379..798026(+) (vraR) [Bacillus subtilis strain SRCM102753]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=239401 C7M16_RS04010 WP_021479675.1 797379..798026(+) (vraR) [Bacillus subtilis strain SRCM102753]
ATGAAAATTGTAATTGCTGATGATCATCATGTTGTCAGGAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTTATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTA
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCCGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4

Multiple sequence alignment