Detailed information NTG0239399

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: CGZ53_RS08320
• Genome accession: NZ_CP022435
• Coordinates: 1625345..1626280 (-)
• Length: 311 a.a.
• NCBI ID: WP_015911920.1
• Uniprot ID: -
• Organism: Streptococcus uberis strain NZ01
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1620345..1631280

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGZ53_RS08290 (CGZ53_08285)	rpsN	1620541..1620810 (+)	270	WP_015911914.1	30S ribosomal protein S14	-
CGZ53_RS08295 (CGZ53_08290)	tsaD	1620924..1621937 (-)	1014	WP_015911915.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
CGZ53_RS08300 (CGZ53_08295)	rimI	1621927..1622352 (-)	426	WP_100912336.1	ribosomal protein S18-alanine N-acetyltransferase	-
CGZ53_RS08305 (CGZ53_08300)	tsaB	1622360..1623052 (-)	693	WP_015911917.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
CGZ53_RS08310 (CGZ53_08305)	-	1623333..1623563 (+)	231	WP_046388349.1	DNA-dependent RNA polymerase subunit epsilon	-
CGZ53_RS08315 (CGZ53_08310)	rnjA	1623565..1625247 (+)	1683	WP_046390691.1	ribonuclease J1	-
CGZ53_RS08320 (CGZ53_08315)	amiF	1625345..1626280 (-)	936	WP_015911920.1	ABC transporter ATP-binding protein	Regulator
CGZ53_RS08325 (CGZ53_08320)	oppD	1626280..1627326 (-)	1047	WP_015911921.1	ABC transporter ATP-binding protein	Regulator
CGZ53_RS08330 (CGZ53_08325)	-	1627338..1628369 (-)	1032	WP_015911922.1	ABC transporter permease	-
CGZ53_RS08335 (CGZ53_08330)	-	1628379..1629293 (-)	915	WP_015911923.1	ABC transporter permease	-
CGZ53_RS08340 (CGZ53_08335)	-	1629368..1631026 (-)	1659	WP_100912270.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35253.09 Da
• Isoelectric Point: 6.1900

>NTDB_id=239399 CGZ53_RS08320 WP_015911920.1 1625345..1626280(-) (amiF) [Streptococcus uberis strain NZ01]
MTENRKKLVELKNVSLIFNKGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGEKVSHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTKTKQEREDRVQELLEHVGLNRDHVTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQEDRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDIERQRVAEIYDPSAEDDGQEREMREITPGHFVLSTEAEAAEYKAKCQK

Nucleotide

• Length: 936 bp

>NTDB_id=239399 CGZ53_RS08320 WP_015911920.1 1625345..1626280(-) (amiF) [Streptococcus uberis strain NZ01]
ATGACTGAAAATCGTAAAAAATTAGTTGAGCTCAAAAATGTCTCTCTAATCTTTAACAAAGGCAAAAAAAATGAAGTGAA
AGCCATTAATAATGTTAGCTTTGACATTTATGAAGGCGAAGTATTTGGACTGGTTGGTGAATCAGGTTCAGGTAAAACAA
CTGTTGGACGTGCGATATTAAAACTTTATGATATCAATGAGGGTGAAATTATTTTCAATGGTGAAAAAGTTTCTCATCTC
AAAGGTAAAGAATTACATGAGTTCAGAAAGAATGCTCAAATGATTTTCCAAGATCCTCAAGCAAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCTGAAGGACTTGATATCCATGGCCTAACCAAAACGAAACAAGAGCGTGAAGATAGGGTTC
AAGAATTGTTAGAGCATGTTGGACTTAATAGAGACCACGTGACACGCTATCCACACGAATTCTCTGGAGGACAACGTCAA
CGTATTGGCATTGCTCGTGCCCTTGCCGTTCAACCTAAGTTTATCATCGCTGATGAACCAATTTCAGCACTGGATGTATC
CATTCAGGCACAGGTTGTTAACCTCATGCAAAAATTACAAGAAGATAGAGGTTTGACCTATCTCTTTATCGCCCACGATT
TGTCAATGGTTAAATACATTTCTGACCGAATTGGGGTTATGCATTGGGGCAAAATGCTAGAAATTGGAACATCTGATGAT
GTTTACAATAACCCAATCCATCCTTATACAAGAAGTTTGCTTTCAGCAATTCCAGAGCCAGATCCAGACATTGAGCGTCA
GCGTGTCGCAGAAATCTATGACCCAAGTGCTGAGGATGATGGACAAGAAAGAGAAATGCGTGAAATTACACCAGGACACT
TTGTTCTATCAACAGAAGCAGAAGCTGCTGAATACAAAGCAAAATGCCAAAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.896	99.035	0.534