Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M16_RS02685 Genome accession   NZ_CP028201
Coordinates   542316..543446 (+) Length   376 a.a.
NCBI ID   WP_128441419.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 537316..548446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS02670 - 539141..540157 (+) 1017 Protein_515 hypothetical protein -
  C7M16_RS02675 (C7M16_00526) - 540372..540809 (+) 438 WP_015252628.1 hypothetical protein -
  C7M16_RS02680 (C7M16_00527) - 541010..542170 (+) 1161 WP_160221412.1 lysozyme inhibitor LprI family protein -
  C7M16_RS02685 (C7M16_00528) rapC 542316..543446 (+) 1131 WP_128441419.1 response regulator aspartate phosphatase RapH Regulator
  C7M16_RS02690 (C7M16_00529) phrH 543436..543609 (+) 174 WP_069837348.1 phosphatase RapH inhibitor PhrH -
  C7M16_RS02695 (C7M16_00530) yeeI 543769..544488 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  C7M16_RS02700 (C7M16_00531) - 544622..545050 (+) 429 WP_128441421.1 spore coat protein -
  C7M16_RS02705 (C7M16_00532) yezE 545165..545749 (+) 585 WP_128441423.1 TetR/AcrR family transcriptional regulator -
  C7M16_RS02710 (C7M16_00533) yesE 545829..546272 (+) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  C7M16_RS02715 (C7M16_00534) yesF 546269..547134 (+) 866 Protein_524 SDR family oxidoreductase -
  C7M16_RS02720 (C7M16_00535) cotJA 547264..547512 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  C7M16_RS02725 (C7M16_00536) cotJB 547496..547759 (+) 264 WP_003219491.1 spore coat protein CotJB -
  C7M16_RS02730 (C7M16_00537) cotJC 547774..548343 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43917.14 Da        Isoelectric Point: 5.7144

>NTDB_id=239396 C7M16_RS02685 WP_128441419.1 542316..543446(+) (rapC) [Bacillus subtilis strain SRCM102753]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALDLAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACSRSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=239396 C7M16_RS02685 WP_128441419.1 542316..543446(+) (rapC) [Bacillus subtilis strain SRCM102753]
TTGAGTCAAGCCATACCGTCTTCGCGTGTCGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTAGATTTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGCAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTTCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396