Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   CGZ53_RS07460 Genome accession   NZ_CP022435
Coordinates   1468998..1469723 (-) Length   241 a.a.
NCBI ID   WP_100912206.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463998..1474723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS07425 (CGZ53_07420) rnpM 1464199..1464495 (-) 297 WP_015911780.1 RNase P modulator RnpM -
  CGZ53_RS07430 (CGZ53_07425) nusA 1464511..1465659 (-) 1149 WP_015911781.1 transcription termination factor NusA -
  CGZ53_RS07435 (CGZ53_07430) rimP 1465715..1466197 (-) 483 WP_080502310.1 ribosome maturation factor RimP -
  CGZ53_RS07445 (CGZ53_07440) trmB 1466475..1467110 (-) 636 WP_015911783.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CGZ53_RS07450 (CGZ53_07445) ccrZ 1467110..1467901 (-) 792 WP_015911784.1 cell cycle regulator CcrZ -
  CGZ53_RS07455 (CGZ53_07450) - 1467962..1468996 (-) 1035 WP_046393673.1 ABC transporter permease -
  CGZ53_RS07460 (CGZ53_07455) pptA 1468998..1469723 (-) 726 WP_100912206.1 ABC transporter ATP-binding protein Regulator
  CGZ53_RS07465 (CGZ53_07460) - 1469999..1470418 (+) 420 WP_015911787.1 HIT family protein -
  CGZ53_RS07470 (CGZ53_07465) - 1470415..1470720 (+) 306 WP_015911788.1 hypothetical protein -
  CGZ53_RS07475 (CGZ53_07470) brpA 1470748..1472064 (-) 1317 WP_046391955.1 biofilm formation/cell division transcriptional regulator BrpA -
  CGZ53_RS07480 (CGZ53_07475) - 1472073..1472585 (-) 513 WP_046390379.1 GNAT family N-acetyltransferase -
  CGZ53_RS07485 (CGZ53_07480) tsaE 1472587..1473030 (-) 444 WP_100912207.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CGZ53_RS07490 (CGZ53_07485) - 1473123..1474583 (-) 1461 WP_046388322.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26977.46 Da        Isoelectric Point: 4.9159

>NTDB_id=239395 CGZ53_RS07460 WP_100912206.1 1468998..1469723(-) (pptA) [Streptococcus uberis strain NZ01]
MLKIENLTGGYLNIPVLKNISFTIEDGELVGLIGLNGAGKSTTIKEIIGLLKPYNGEITIDGLSIEQDNQNYRKKIGFIP
ETPSLYEELTLKEHIEITAMAYDIPVEKALQRAESLLETYRLSDKLDWFPSLFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAISDLVAHLEEEKKKGKSILMSTHVLDSAEKMCDRFIILHKGQIKAQGTLEELRKSFGQSGASLNDIYLMLTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=239395 CGZ53_RS07460 WP_100912206.1 1468998..1469723(-) (pptA) [Streptococcus uberis strain NZ01]
ATGCTAAAAATTGAAAATCTTACAGGCGGTTACCTTAATATTCCAGTGTTAAAAAATATTTCTTTTACAATAGAAGATGG
AGAACTAGTTGGCCTAATTGGTTTAAATGGTGCCGGGAAATCAACAACCATTAAAGAAATCATTGGCTTATTAAAACCTT
ATAATGGGGAAATAACAATTGATGGCCTTAGTATAGAACAAGATAATCAAAACTATAGGAAAAAAATTGGTTTTATTCCC
GAAACGCCAAGTTTATATGAGGAATTAACCCTTAAAGAACATATTGAAATTACAGCAATGGCCTATGATATCCCTGTTGA
GAAGGCCTTACAAAGAGCTGAAAGTTTATTAGAAACGTATCGCCTTTCGGATAAATTGGATTGGTTTCCAAGCCTGTTTT
CTAAAGGGATGAAACAAAAAGTGATGATTATTTGTGCCTTCATTATTGATCCTAGTCTCTTTATATTAGATGAACCCTTT
TTAGGACTAGATCCTTTAGCTATTTCAGATTTGGTTGCACATTTAGAAGAAGAAAAAAAGAAGGGCAAGTCCATTTTAAT
GAGTACTCATGTTTTAGATTCTGCTGAAAAAATGTGTGACCGTTTCATTATTCTTCATAAGGGACAGATTAAAGCTCAAG
GAACACTTGAAGAGCTAAGAAAAAGCTTTGGACAGTCAGGTGCTAGCTTAAATGATATCTACCTAATGTTAACAAAAGAG
GTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

72.803

99.17

0.722
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722

Multiple sequence alignment