Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M16_RS01910 Genome accession   NZ_CP028201
Coordinates   377085..377726 (+) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 372085..382726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS01880 (C7M16_00371) ydfE 373292..373915 (-) 624 WP_069837276.1 flavin reductase family protein -
  C7M16_RS01885 (C7M16_00372) ydfF 374005..374685 (+) 681 WP_019712438.1 winged helix-turn-helix domain-containing protein -
  C7M16_RS01890 (C7M16_00373) ydfG 374753..375196 (-) 444 WP_160221368.1 carboxymuconolactone decarboxylase family protein -
  C7M16_RS01895 (C7M16_00374) - 375282..375461 (-) 180 WP_010886421.1 hypothetical protein -
  C7M16_RS01900 - 375458..375601 (-) 144 WP_014478971.1 hypothetical protein -
  C7M16_RS01905 (C7M16_00375) ydfH 375869..377092 (+) 1224 WP_041520508.1 two-component system sensor histidine kinase YdfH -
  C7M16_RS01910 (C7M16_00376) vraR 377085..377726 (+) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  C7M16_RS01915 (C7M16_00377) pleJ 377842..380016 (+) 2175 WP_160221369.1 MMPL family transporter -
  C7M16_RS01920 (C7M16_00378) cesA 380428..381330 (-) 903 WP_160221370.1 carboxylesterase -
  C7M16_RS01925 (C7M16_00379) ydfK 381533..382222 (-) 690 WP_019712443.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=239394 C7M16_RS01910 WP_003234184.1 377085..377726(+) (vraR) [Bacillus subtilis strain SRCM102753]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=239394 C7M16_RS01910 WP_003234184.1 377085..377726(+) (vraR) [Bacillus subtilis strain SRCM102753]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCTAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362