Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C7A99_RS21490 Genome accession   NZ_CP028192
Coordinates   4154683..4155288 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CFSAN018748     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149683..4160288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A99_RS21465 (C7A99_21450) aes 4149824..4150783 (+) 960 WP_000764314.1 acetyl esterase -
  C7A99_RS21470 (C7A99_21455) hemH 4150780..4151742 (-) 963 WP_001250111.1 ferrochelatase -
  C7A99_RS21475 (C7A99_21460) adk 4151874..4152518 (-) 645 WP_001220233.1 adenylate kinase -
  C7A99_RS21485 (C7A99_21470) htpG 4152699..4154573 (-) 1875 WP_000678197.1 molecular chaperone HtpG -
  C7A99_RS21490 (C7A99_21475) recR 4154683..4155288 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  C7A99_RS21495 (C7A99_21480) ybaB 4155288..4155617 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  C7A99_RS21500 (C7A99_21485) dnaX 4155670..4157601 (-) 1932 WP_107236142.1 DNA polymerase III subunit gamma/tau -
  C7A99_RS21505 (C7A99_21490) apt 4157730..4158281 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  C7A99_RS21515 (C7A99_21500) ybaN 4158434..4158811 (-) 378 WP_001188905.1 DUF454 family protein -
  C7A99_RS21520 (C7A99_21505) priC 4158881..4159408 (+) 528 WP_107236143.1 primosomal replication protein N'' -
  C7A99_RS21525 (C7A99_21510) rsmS 4159422..4159586 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=239368 C7A99_RS21490 WP_001195025.1 4154683..4155288(-) (recR) [Escherichia coli strain CFSAN018748]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=239368 C7A99_RS21490 WP_001195025.1 4154683..4155288(-) (recR) [Escherichia coli strain CFSAN018748]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment