Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C7A99_RS12075 Genome accession   NZ_CP028192
Coordinates   2384824..2386248 (-) Length   474 a.a.
NCBI ID   WP_107235806.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN018748     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2379824..2391248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A99_RS12035 (C7A99_12020) yefM 2380030..2380281 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  C7A99_RS12040 (C7A99_12025) yoeB 2380278..2380532 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  C7A99_RS12045 (C7A99_12030) yeeZ 2380615..2381439 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  C7A99_RS12050 (C7A99_12035) yeeY 2381485..2382414 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C7A99_RS12055 (C7A99_12040) yoeI 2382629..2382691 (+) 63 WP_010723108.1 membrane protein YoeI -
  C7A99_RS12060 (C7A99_12045) plaP 2382681..2384039 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C7A99_RS12070 (C7A99_12055) tnpA 2384253..2384711 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  C7A99_RS12075 (C7A99_12060) sbcB 2384824..2386248 (-) 1425 WP_107235806.1 exodeoxyribonuclease I Machinery gene
  C7A99_RS12080 (C7A99_12065) - 2386430..2387608 (+) 1179 WP_107235807.1 site-specific integrase -
  C7A99_RS12085 (C7A99_12070) - 2387589..2387780 (-) 192 WP_057762969.1 AlpA family phage regulatory protein -
  C7A99_RS12090 (C7A99_12075) - 2387862..2388206 (-) 345 WP_001281200.1 hypothetical protein -
  C7A99_RS12095 (C7A99_12080) - 2388307..2388486 (-) 180 WP_001277763.1 Eag protein -
  C7A99_RS12100 (C7A99_12085) - 2388583..2389002 (-) 420 Protein_2216 DUF551 domain-containing protein -
  C7A99_RS12105 (C7A99_12090) - 2389005..2389367 (-) 363 Protein_2217 ead/Ea22-like family protein -
  C7A99_RS12110 (C7A99_12095) - 2389364..2389531 (-) 168 WP_016063110.1 DUF2737 family protein -
  C7A99_RS12115 (C7A99_12100) - 2389542..2389835 (-) 294 WP_001111298.1 phage anti-RecBCD protein -
  C7A99_RS12120 (C7A99_12105) - 2389859..2390446 (-) 588 WP_001535902.1 hypothetical protein -
  C7A99_RS12125 (C7A99_12110) - 2390443..2391123 (-) 681 WP_000536247.1 ATP-binding protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54309.61 Da        Isoelectric Point: 5.4720

>NTDB_id=239349 C7A99_RS12075 WP_107235806.1 2384824..2386248(-) (sbcB) [Escherichia coli strain CFSAN018748]
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDVD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=239349 C7A99_RS12075 WP_107235806.1 2384824..2386248(-) (sbcB) [Escherichia coli strain CFSAN018748]
ATGACAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCTGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGTCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGTCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

99.156

0.582