Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VITFI_RS15340 Genome accession   NZ_CP022423
Coordinates   3255199..3255591 (-) Length   130 a.a.
NCBI ID   WP_089418198.1    Uniprot ID   -
Organism   Vitreoscilla filiformis strain ATCC 15551     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250199..3260591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VITFI_RS15325 (VITFI_CDS3070) - 3251810..3254140 (-) 2331 WP_089417721.1 methyl-accepting chemotaxis protein -
  VITFI_RS15330 (VITFI_CDS3071) - 3254206..3254742 (-) 537 WP_089417722.1 chemotaxis protein CheW -
  VITFI_RS15335 (VITFI_CDS3072) - 3254771..3255130 (-) 360 WP_198301780.1 response regulator -
  VITFI_RS15340 (VITFI_CDS3073) pilG 3255199..3255591 (-) 393 WP_089418198.1 response regulator Regulator
  VITFI_RS15345 (VITFI_CDS3074) - 3255679..3255831 (-) 153 WP_089417724.1 rubredoxin -
  VITFI_RS18520 (VITFI_CDS3075) - 3256015..3256983 (+) 969 WP_232476633.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VITFI_RS15355 (VITFI_CDS3076) hemL 3256973..3258295 (+) 1323 WP_232476634.1 glutamate-1-semialdehyde 2,1-aminomutase -
  VITFI_RS15360 (VITFI_CDS3077) - 3258299..3259135 (+) 837 WP_089417726.1 D-hexose-6-phosphate mutarotase -
  VITFI_RS15365 (VITFI_CDS3078) mpl 3259137..3260516 (+) 1380 WP_089417727.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14443.75 Da        Isoelectric Point: 9.0848

>NTDB_id=239291 VITFI_RS15340 WP_089418198.1 3255199..3255591(-) (pilG) [Vitreoscilla filiformis strain ATCC 15551]
MARKPGTTRVLVIDDSNTIRRSAEIFLKQGGYEVVLAEDGFDALAKVNDLEPNVIFCDILMPRLDGYQTCAIIKRNPRFT
KVPVIMLSSKDGVFDKARGRMVGSDDYLTKPFTKDQLLTVVAQFSTRAAA

Nucleotide


Download         Length: 393 bp        

>NTDB_id=239291 VITFI_RS15340 WP_089418198.1 3255199..3255591(-) (pilG) [Vitreoscilla filiformis strain ATCC 15551]
CTGGCAAGAAAGCCGGGAACAACCCGGGTGCTCGTCATTGACGACAGCAACACGATCCGCCGCAGCGCGGAAATCTTTCT
CAAGCAAGGCGGCTACGAGGTGGTGCTGGCAGAGGATGGTTTCGACGCGCTGGCCAAGGTCAATGACTTGGAACCCAACG
TCATCTTTTGTGACATTTTGATGCCGCGCCTGGATGGCTACCAGACCTGCGCCATCATCAAGCGCAACCCCCGTTTTACC
AAAGTGCCGGTGATCATGCTGTCTTCGAAAGATGGCGTGTTTGACAAAGCGCGTGGTCGGATGGTGGGTTCGGATGACTA
CCTGACCAAACCCTTCACCAAAGATCAACTGCTGACTGTGGTCGCGCAGTTCAGCACCAGGGCTGCCGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.062

86.923

0.531

Multiple sequence alignment