Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C9J86_RS12450 Genome accession   NZ_CP028190
Coordinates   2451242..2452621 (-) Length   459 a.a.
NCBI ID   WP_053865732.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN018749     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2446242..2457621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J86_RS12420 (C9J86_12420) - 2446292..2446408 (-) 117 WP_001791200.1 hypothetical protein -
  C9J86_RS12425 (C9J86_12425) cmk 2446439..2447098 (-) 660 WP_000644393.1 (d)CMP kinase -
  C9J86_RS12430 (C9J86_12430) - 2447175..2448143 (+) 969 WP_000681744.1 asparaginase -
  C9J86_RS12435 (C9J86_12435) ypdA 2448258..2449244 (-) 987 WP_001174260.1 bacillithiol disulfide reductase YpdA -
  C9J86_RS12440 (C9J86_12440) - 2449405..2449494 (-) 90 WP_223200500.1 hypothetical protein -
  C9J86_RS12445 (C9J86_12445) ebpS 2449629..2451089 (-) 1461 WP_000069298.1 elastin-binding protein EbpS -
  C9J86_RS12450 (C9J86_12450) recS 2451242..2452621 (-) 1380 WP_053865732.1 RecQ family ATP-dependent DNA helicase Machinery gene
  C9J86_RS12455 (C9J86_12455) - 2452611..2453564 (-) 954 WP_001163814.1 helix-turn-helix domain-containing protein -
  C9J86_RS12460 (C9J86_12460) - 2453672..2453920 (+) 249 WP_001151997.1 ferredoxin -
  C9J86_RS12465 (C9J86_12465) - 2454026..2454571 (-) 546 WP_001186908.1 ECF transporter S component -
  C9J86_RS12470 (C9J86_12470) - 2455219..2456139 (-) 921 WP_000913246.1 DUF1672 domain-containing protein -
  C9J86_RS12475 (C9J86_12475) - 2456235..2456360 (-) 126 Protein_2354 hypothetical protein -
  C9J86_RS12480 (C9J86_12480) - 2456353..2457267 (-) 915 WP_000476887.1 DUF1672 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52821.13 Da        Isoelectric Point: 6.9225

>NTDB_id=239274 C9J86_RS12450 WP_053865732.1 2451242..2452621(-) (recS) [Staphylococcus aureus strain CFSAN018749]
MLHDILRNKFGFENFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLIISPLISLMDDQVMQLKINGEK
RVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNFKLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHF
KEAVVLALTATAPPHLQDDLTEMLEIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFHLSTSPSNYIQEIGRAGRDGE
LSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLAPDKQDVLTTLHSFYSIGALKQVFKKSFKRKQLGLFRMIGY
CKLDQCRRKYLLEFFGEYPPAQDRCCDNDSNITDIAILNKKKVIRSIGFDEKLQNLFLR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=239274 C9J86_RS12450 WP_053865732.1 2451242..2452621(-) (recS) [Staphylococcus aureus strain CFSAN018749]
ATGTTGCATGATATTTTACGAAACAAATTTGGCTTCGAGAATTTTAAACCGGGACAACAGGAAATTATAGAAAGTATAAT
GTCTCAACAACACACTCTAGGTATTCTTCCAACTGGAAGTGGAAAGAGTTTGTGTTATCAAATACCTACGTATTTATCAG
GTAAGCCGACATTAATTATCTCACCGTTAATATCTTTAATGGATGACCAAGTTATGCAGTTGAAAATAAATGGAGAAAAA
CGTGTAACATGTATTCACTCTGGTATGGATGAAATTGAGAAAAAGCATAATATTAAATGTTTACGACATAGCCGCTTCAT
CTTTCTAAGTCCAGAATTTCTCCTGCAGCCGTCAAATTTTAAATTAATATCTATGATAGACTTTGGCATGATTGTTCTAG
ATGAAGCACATTGTCTATCTGAATGGGGATATGATTTCAGACCACATTATGCTCTAATTGGAAAAGTAACAAAGCATTTT
AAAGAAGCGGTTGTCTTAGCATTGACAGCAACTGCACCACCGCATTTGCAAGATGATTTGACGGAAATGCTAGAGATTCA
ATTCAACGTTATTAAAACTACAATGAATCGCCCAAACATAAGCTTTAAGCATCTTAATTTTCATGATGATGAAGATAAAA
TTGAGTGGTTGCTGCCGTTTCTACAACAGTCGGGACCAACGATTATTTATGTCTCATCGAAAAAGATGTGTCTGAATTTA
GCGCAACTTATTTATGATTCAGGTTTTCTTACTGGCATTTATCATGGTGATATGAATTATCAAGAGCGACACACAGTTCA
ACAACAATTTTTAAATAATGATATTCCGATTATAGTCGCAACGAGTGCTTTTGGTATGGGAATTAATAAAAAAGATATTC
GCACAATCATTCACTTTCATCTTTCAACAAGTCCTTCTAACTACATTCAAGAAATTGGACGTGCGGGTCGCGATGGTGAA
CTAAGTCAGGCAATTAGTTTATTTCAACCGGACGATAAATATATTTTAGAAACGTTATTATTTGCAGATATGATAACAGA
AGAAGATGTACAAAATTTCGAAATAGGAGAATTTTTAGCACCCGATAAACAAGACGTTTTGACAACGTTGCATTCATTCT
ATAGTATCGGCGCCTTGAAACAGGTATTTAAGAAATCATTTAAACGAAAGCAATTAGGACTCTTTCGTATGATTGGCTAT
TGCAAATTGGATCAATGTAGACGGAAGTATTTATTAGAATTTTTCGGTGAATATCCACCGGCACAAGATCGATGTTGTGA
CAATGATTCTAATATAACTGATATCGCAATTTTAAATAAGAAGAAGGTAATTAGAAGTATTGGATTTGATGAAAAGTTGC
AAAATTTATTTCTCAGATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-175)

Helicase conserved C-terminal domain (Helicase_C)

(212-318)

RecQ zinc-binding (RecQ_Zn_bind)

(388-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

37.528

98.693

0.37

Multiple sequence alignment