Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CCX46_RS28575 Genome accession   NZ_CP022411
Coordinates   6236874..6237278 (-) Length   134 a.a.
NCBI ID   WP_007913673.1    Uniprot ID   -
Organism   Pseudomonas sp. RU47     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6231874..6242278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX46_RS28555 (CCX46_28050) - 6233698..6235743 (-) 2046 WP_016985966.1 methyl-accepting chemotaxis protein -
  CCX46_RS28565 (CCX46_28055) - 6235898..6236437 (-) 540 WP_122604417.1 chemotaxis protein CheW -
  CCX46_RS28570 (CCX46_28060) pilH 6236448..6236813 (-) 366 WP_127930104.1 twitching motility response regulator PilH -
  CCX46_RS28575 (CCX46_28065) pilG 6236874..6237278 (-) 405 WP_007913673.1 twitching motility response regulator PilG Regulator
  CCX46_RS28580 (CCX46_28070) gshB 6237504..6238475 (+) 972 WP_127930105.1 glutathione synthase -
  CCX46_RS28585 (CCX46_28075) - 6238583..6239482 (+) 900 WP_038358807.1 energy transducer TonB -
  CCX46_RS28590 (CCX46_28080) - 6239655..6240227 (+) 573 WP_016985971.1 YqgE/AlgH family protein -
  CCX46_RS28595 (CCX46_28085) ruvX 6240227..6240664 (+) 438 WP_008077844.1 Holliday junction resolvase RuvX -
  CCX46_RS28600 (CCX46_28090) pyrR 6240745..6241251 (+) 507 WP_064116261.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14592.99 Da        Isoelectric Point: 7.1346

>NTDB_id=239243 CCX46_RS28575 WP_007913673.1 6236874..6237278(-) (pilG) [Pseudomonas sp. RU47]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=239243 CCX46_RS28575 WP_007913673.1 6236874..6237278(-) (pilG) [Pseudomonas sp. RU47]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTGATCGACGACTCGAAAACGATTCGTCGCACCGCCGAAACCTTGTT
GAAGAATGTCGGGTGCGAAGTAATCACGGCGATCGACGGTTTCGACGCTTTGGCGAAGATCGCCGACAACCATCCCGGGA
TCATTTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAGTGCGTTCAAG
GCCACGCCGGTGATCATGCTGTCATCGCGTGACGGGCTGTTCGACAAGGCCAAGGGGCGGATTGTCGGTTCTGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCAACGCGATCCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701

Multiple sequence alignment