Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CGC32_RS07335 Genome accession   NZ_CP022409
Coordinates   1483931..1484212 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain G272     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478931..1489212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS07315 (CGC32_07320) - 1479660..1481090 (-) 1431 WP_198360893.1 COG3014 family protein -
  CGC32_RS07325 (CGC32_07330) comB4 1481302..1483665 (-) 2364 WP_089483025.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CGC32_RS07330 (CGC32_07335) comB3 1483668..1483931 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  CGC32_RS07335 (CGC32_07340) comB2 1483931..1484212 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CGC32_RS07340 (CGC32_07345) - 1484358..1485185 (-) 828 WP_089483026.1 DUF5718 family protein -
  CGC32_RS07345 (CGC32_07350) - 1485278..1486330 (-) 1053 WP_089483027.1 MnmA/TRMU family protein -
  CGC32_RS07350 (CGC32_07355) dnaG 1486327..1488006 (-) 1680 WP_089483028.1 DNA primase -
  CGC32_RS07360 (CGC32_07365) groES 1488282..1488638 (+) 357 WP_089483029.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=239219 CGC32_RS07335 WP_001272686.1 1483931..1484212(-) (comB2) [Helicobacter pylori strain G272]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=239219 CGC32_RS07335 WP_001272686.1 1483931..1484212(-) (comB2) [Helicobacter pylori strain G272]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGCTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGGATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment