Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CGC32_RS07330 | Genome accession | NZ_CP022409 |
| Coordinates | 1483668..1483931 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain G272 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1478668..1488931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGC32_RS07315 (CGC32_07320) | - | 1479660..1481090 (-) | 1431 | WP_198360893.1 | COG3014 family protein | - |
| CGC32_RS07325 (CGC32_07330) | comB4 | 1481302..1483665 (-) | 2364 | WP_089483025.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| CGC32_RS07330 (CGC32_07335) | comB3 | 1483668..1483931 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| CGC32_RS07335 (CGC32_07340) | comB2 | 1483931..1484212 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| CGC32_RS07340 (CGC32_07345) | - | 1484358..1485185 (-) | 828 | WP_089483026.1 | DUF5718 family protein | - |
| CGC32_RS07345 (CGC32_07350) | - | 1485278..1486330 (-) | 1053 | WP_089483027.1 | MnmA/TRMU family protein | - |
| CGC32_RS07350 (CGC32_07355) | dnaG | 1486327..1488006 (-) | 1680 | WP_089483028.1 | DNA primase | - |
| CGC32_RS07360 (CGC32_07365) | groES | 1488282..1488638 (+) | 357 | WP_089483029.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=239218 CGC32_RS07330 WP_000584955.1 1483668..1483931(-) (comB3) [Helicobacter pylori strain G272]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=239218 CGC32_RS07330 WP_000584955.1 1483668..1483931(-) (comB3) [Helicobacter pylori strain G272]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |